Name: Desulfofundulus thermosubterraneus RL50JIII
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11830

Type strain:

Species: Desulfofundulus thermosubterraneus

Strain Designation: RL50JIII

Culture col. no.: DSM 16057, JCM 13837

Strain history: DSM 16057 <-- A. Kaksonen RL50JIII.

NCBI tax ID(s): 1121432 (strain), 348840 (species)

SI-ID 297186

DSM 16057, JCM 13837

Section

Desulfofundulus thermosubterraneus RL50JIII is an anaerobe, spore-forming, thermophilic bacterium that was isolated from geothermally active underground mine.

motile
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Desulfofundulus*
	Species	**Desulfofundulus thermosubterraneus**
	Full Scientific Name (LPSN)	Desulfofundulus thermosubterraneus (Kaksonen et al. 2006) Watanabe et al. 2018

Synonym

Desulfotomaculum thermosubterraneum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.63

[Ref.: #69480]	Motility	yes Confidence in %96.987

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6246]

Culture medium

DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)

[Ref.: #6246]

Culture medium growth

[Ref.: #6246]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6246]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6246]			growth	60 °C
[Ref.: #67770]			growth	60 °C

[Ref.: #6246]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6246]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69480]

Ability of spore formation

yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6246]	Sample type/isolated from	geothermally active underground mine
[Ref.: #6246]	Geographic location (country and/or sea, region)	Hokkaido, Toyoha mine
[Ref.: #6246]	Country	Japan
[Ref.: #6246]	Country ISO 3 Code	JPN
[Ref.: #6246]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Geothermally active underground mine
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Other

#Mine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6246]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6246]	Desulfotomaculum thermosubterraneum strain RL50JIII 16S ribosomal RNA gene, partial sequence	DQ208688	1505	ENA	1121432 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Desulfofundulus thermosubterraneus DSM 16057	GCA_900142025	scaffold	GenBank	1121432 tax ID
[Ref.: #66792]	Desulfotomaculum thermosubterraneum DSM 16057	1121432.3	wgs	PATRIC	1121432 tax ID	*
[Ref.: #66792]	Desulfofundulus thermosubterraneus DSM 16057	2585428086	draft	JGI IMG/M	1121432 tax ID	*

[Ref.: #67770]

GC-content

54.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfofundulus thermosubterraneus DSM 16057 DSM 16057 NCBI: GCA_900142025.1
[Ref.: #69481]	spore-forming	yes	77	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfotomaculum thermosubterraneum DSM 16057 PATRIC: 1121432.3
[Ref.: #69480]	motile	yes	82.028	no
[Ref.: #69480]	flagellated	no	95.281	no
[Ref.: #69480]	gram-positive	no	90.404	no
[Ref.: #69480]	anaerobic	yes	99.578	yes
[Ref.: #69480]	aerobic	no	98.422	no
[Ref.: #69480]	halophile	no	97.02	no
[Ref.: #69480]	spore-forming	yes	92.747	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	79.122	no
[Ref.: #69480]	glucose-ferment	no	83.47	no

Availability in culture collections External links

[Ref.: #6246]

Culture collection no.

DSM 16057, JCM 13837

[Ref.: #81049]

SI-ID 297186

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Desulfotomaculum thermosubterraneum sp. nov., a thermophilic sulfate-reducer isolated from an underground mine located in a geothermally active area.	Kaksonen AH, Spring S, Schumann P, Kroppenstedt RM, Puhakka JA	Int J Syst Evol Microbiol	10.1099/ijs.0.64439-0	2006	*

References

#6246

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16057

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81049

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297186.1 )

* These data were automatically processed and therefore are not curated

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Desulfofundulus thermosubterraneus DSM 16057 DSM 16057

Desulfotomaculum thermosubterraneum DSM 16057

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