Desulfotruncus alcoholivorax (DSM 16058, JCM 14019, RE35E1)

Name: Desulfotruncus alcoholivorax (DSM 16058, JCM 14019, RE35E1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11831

Type strain

Strain Designation RE35E1

Culture col. no. DSM 16058 JCM 14019 RE35E1

NCBI tax ID(s) 1121422 265477

Special Collections DSMZ JCM Literature strains

History <- A. H. Kaksonen, Tampere Univ. Technol., Finland; RE35E1 <- A. H. Kaksonen {2002} DSM 16058 <-- A. Kaksonen RE35E1.

Links

Desulfotruncus alcoholivorax RE35E1 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from fluidized-bed reactor.

spore-forming Gram-positive motile rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 343793

DSM 16058,JCM 14019

@ref 20215

Last LPSN update 2026-02-09 11:20:40

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Peptococcaceae

Genus Desulfotruncus

Species Desulfotruncus alcoholivorax

Full scientific name Desulfotruncus alcoholivorax (Kaksonen et al. 2008) Watanabe et al. 2021

Synonyms (2)

Desulfallas alcoholivorax
Desulfotomaculum alcoholivorax

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32137	positive	5 µm	0.9 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6247	DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)		Medium recipe at MediaDive	Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641; with strain-specific modifications) Composition: Na-pyruvate 2.49252 g/l Na2SO4 1.99402 g/l Na2S2O3 x 5 H2O 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6247	positive	growth	45
32137	positive	growth	33-51
32137	positive	optimum	45
67770	positive	growth	50

Culture pH

@ref	Ability	Type	PH
32137	positive	optimum	6.85
32137	positive	growth	6-7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6247	anaerobe
125438	anaerobe	92.36
125439	anaerobe	99.7

Spore formation

32137

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32137	NaCl	positive	growth	0-0.25 %

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Bioreactor

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6247	fluidized-bed reactor	Finland	FIN	Europe
67770	Fluidized-bed-reactor treating acidic water containing metal and sulfate

Taxonmaps

69479

Global distribution of 16S sequence AY548778 (>99% sequence identity) for Desulfallas alcoholivorax subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	6
Animal Samples
Plant Samples
Total Samples	7

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6247	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM43088v1 assembly for Desulfotruncus alcoholivorax DSM 16058	scaffold	GCA_000430885	1121422.3	2524023147	1121422	64.05

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6247	Desulfotomaculum alcoholivorax strain RE35E1 16S ribosomal RNA gene gene, partial sequence	AY548778	1429		1121422

GC content

@ref	GC-content (mol%)	Method
6247	48	high performance liquid chromatography (HPLC)
32137	48

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Desulfotruncus alcoholivorax DSM 16058
NCBI: GCA_000430885

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	77.20	no
125439	motility	BacteriaNetⓘ	yes	52.10	no
125439	gram_stain	BacteriaNetⓘ	variable	74.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfotomaculum alcoholivorax DSM 16058
PATRIC: 1121422.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	58.04	yes
125438	anaerobic	anaerobicⓘ	yes	92.36	yes
125438	spore-forming	spore-formingⓘ	yes	83.48	yes
125438	aerobic	aerobicⓘ	no	94.49	yes
125438	thermophilic	thermophileⓘ	no	50.36	no
125438	flagellated	motile2+ⓘ	yes	67.52	no

Literature

Title	Authors	Journal	DOI	Year
Identification of novel tail-anchored membrane proteins integrated by the bacterial twin-arginine translocase.	Gallego-Parrilla JJ, Severi E, Chandra G, Palmer T.	Microbiology (Reading)	10.1099/mic.0.001431	2024

References

#6247	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16058
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28381	IJSEM 833 2008 ( DOI 10.1099/ijs.0.65025-0 , PubMed 18398178 )
#32137	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28381
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Desulfotruncus alcoholivorax (DSM 16058, JCM 14019, RE35E1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000430885

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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