Name: Desulfofundulus thermocisternus ST90
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11818

Type strain:

Species: Desulfofundulus thermocisternus

Strain Designation: ST90

Culture col. no.: DSM 10259, NBRC 112757

Strain history: <- R. K. Nilsen; ST90 <- T. Torsvik {1988}

NCBI tax ID(s): 1121430 (strain), 42471 (species)

SI-ID 48790

DSM 10259

Special Collections

DSMZ

Section

Desulfofundulus thermocisternus ST90 is an anaerobe, spore-forming bacterium that was isolated from formation water, oil reservoir.

spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Desulfofundulus*
	Species	**Desulfofundulus thermocisternus**
	Full Scientific Name (LPSN)	Desulfofundulus thermocisternus (Nilsen et al. 1996) Watanabe et al. 2018

Synonym

Desulfotomaculum thermocisternum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3874]

Culture medium

DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)

[Ref.: #3874]

Culture medium growth

[Ref.: #3874]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3874]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3874]			growth	60 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3874]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %95.225

[Ref.: #69481]

Ability of spore formation

yes Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3874]	Sample type/isolated from	formation water, oil reservoir
[Ref.: #3874]	Geographic location (country and/or sea, region)	North sea
[Ref.: #3874]	Country	Norway
[Ref.: #3874]	Country ISO 3 Code	NOR
[Ref.: #3874]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U33455 (>99% sequence identity) for Desulfofundulus thermocisternus from Microbeatlas

Aquatic Samples	26
Soil Samples	8
Animal Samples	168
Plant Samples	10
Total Samples	212

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3874]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3874]	Desulfotomaculum thermocisternum strain ST90 16S-like ribosomal RNA	U33455	1392	GenBank ENA	1121430 tax ID
[Ref.: #124043]	Desulfotomaculum thermocisternum partial 16S rRNA gene, type strain DSM 10259T, clone 1	HG794414	1629	GenBank ENA	1121430 tax ID	*
[Ref.: #124043]	Desulfotomaculum thermocisternum partial 16S rRNA gene, type strain DSM 10259T, clone 2	HG794415	1628	GenBank ENA	1121430 tax ID	*
[Ref.: #124043]	Desulfotomaculum thermocisternum partial 16S rRNA gene, type strain DSM 10259T, clone 3	HG794416	1692	GenBank ENA	1121430 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfofundulus thermocisternus DSM 10259	GCA_000686645	scaffold	GenBank ENA	1121430 tax ID	*
[Ref.: #66792]	Desulfotomaculum thermocisternum DSM 10259	1121430.3	wgs	PATRIC	1121430 tax ID	*
[Ref.: #66792]	Desulfofundulus thermocisternus DSM 10259	2563366724	draft	JGI IMG/M	1121430 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfofundulus thermocisternus DSM 10259 DSM 10259 NCBI: GCA_000686645.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfofundulus thermocisternus DSM 10259 DSM 10259 NCBI: GCA_000686645.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	66.566	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	95.225	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.145	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	81.414	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	80.036	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	66.567	no

Availability in culture collections External links

[Ref.: #3874]

Culture collection no.

DSM 10259, NBRC 112757

[Ref.: #81036]

SI-ID 48790

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfovirgula thermocuniculi gen. nov., sp. nov., a thermophilic sulfate-reducer isolated from a geothermal underground mine in Japan.	Kaksonen AH, Spring S, Schumann P, Kroppenstedt RM, Puhakka JA	Int J Syst Evol Microbiol	10.1099/ijs.0.64655-0	2007	*

References

#3874

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10259

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81036

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48790.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Desulfofundulus thermocisternus DSM 10259 DSM 10259

Desulfofundulus thermocisternus DSM 10259 DSM 10259

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