Strain identifier
BacDive ID: 11818
Type strain: 
Species: Desulfofundulus thermocisternus
Strain Designation: ST90
Strain history: <- R. K. Nilsen; ST90 <- T. Torsvik {1988}
NCBI tax ID(s): 1121430 (strain), 42471 (species)
version 8.1 (current version)
General
@ref: 3874
BacDive-ID: 11818
DSM-Number: 10259
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, motile
description: Desulfofundulus thermocisternus ST90 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from formation water, oil reservoir.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 42471 | species |
| 1121430 | strain |
strain history
- @ref: 3874
- history: <- R. K. Nilsen; ST90 <- T. Torsvik {1988}
doi: 10.13145/bacdive11818.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptococcaceae
- genus: Desulfofundulus
- species: Desulfofundulus thermocisternus
- full scientific name: Desulfofundulus thermocisternus (Nilsen et al. 1996) Watanabe et al. 2018
synonyms
- @ref: 20215
- synonym: Desulfotomaculum thermocisternum
@ref: 3874
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptococcaceae
genus: Desulfofundulus
species: Desulfofundulus thermocisternus
full scientific name: Desulfofundulus thermocisternus (Nilsen et al. 1996) Watanabe et al. 2018
strain designation: ST90
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 91.054 | |
| 69480 | 99.999 | positive |
Culture and growth conditions
culture medium
- @ref: 3874
- name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/195c
- composition: Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 3874 | positive | growth | 60 | thermophilic | |
| 69480 | thermophilic | 100 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 3874 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 99 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 3874
- sample type: formation water, oil reservoir
- geographic location: North sea
- country: Norway
- origin.country: NOR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Oil reservoir |
| #Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_16106.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_403;96_4734;97_9871;98_12140;99_16106&stattab=map
- Last taxonomy: Desulfofundulus thermocisternus
- 16S sequence: U33455
- Sequence Identity:
- Total samples: 212
- soil counts: 8
- aquatic counts: 26
- animal counts: 168
- plant counts: 10
Safety information
risk assessment
- @ref: 3874
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3874
- description: Desulfotomaculum thermocisternum strain ST90 16S-like ribosomal RNA
- accession: U33455
- length: 1392
- database: ena
- NCBI tax ID: 1121430
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfofundulus thermocisternus DSM 10259 | GCA_000686645 | scaffold | ncbi | 1121430 |
| 66792 | Desulfotomaculum thermocisternum DSM 10259 | 1121430.3 | wgs | patric | 1121430 |
| 66792 | Desulfofundulus thermocisternus DSM 10259 | 2563366724 | draft | img | 1121430 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 99 | no |
| motile | yes | 82.212 | no |
| flagellated | no | 95.939 | no |
| gram-positive | no | 76.795 | no |
| anaerobic | yes | 99.673 | yes |
| halophile | no | 95.867 | no |
| spore-forming | yes | 95.179 | no |
| glucose-util | yes | 81.35 | no |
| aerobic | no | 97.049 | no |
| thermophile | yes | 100 | yes |
| glucose-ferment | no | 81.028 | no |
External links
@ref: 3874
culture collection no.: DSM 10259, NBRC 112757
straininfo link
- @ref: 81036
- straininfo: 48790
literature
- topic: Phylogeny
- Pubmed-ID: 17220449
- title: Desulfovirgula thermocuniculi gen. nov., sp. nov., a thermophilic sulfate-reducer isolated from a geothermal underground mine in Japan.
- authors: Kaksonen AH, Spring S, Schumann P, Kroppenstedt RM, Puhakka JA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64655-0
- year: 2007
- mesh: DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Bacteria/chemistry/*classification/genetics/isolation & purification, *Hot Temperature, Japan, *Mining, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfates/*metabolism
- topic2: Stress
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3874 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10259) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10259 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 81036 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48790.1 | StrainInfo: A central database for resolving microbial strain identifiers |