Name: Thermincola ferriacetica Z-0001
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11788

Type strain:

Species: Thermincola ferriacetica

Strain Designation: Z-0001

Culture col. no.: DSM 14005, VKM B-2307

Strain history: <- D. G. Zavarzina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Z-0001 <- D. G. Zavarzina {2000}

NCBI tax ID(s): 281456 (species)

SI-ID 401356

DSM 14005

Section

Thermincola ferriacetica Z-0001 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from ferric deposits of a terrestrial hydrothermal spring.

motile
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Thermincola*
	Species	**Thermincola ferriacetica**
	Full Scientific Name (LPSN)	Thermincola ferriacetica Zavarzina et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.72

[Ref.: #69480]	Motility	yes Confidence in %94.282

[Ref.: #5129]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5129]

Culture medium

THERMINCOLA FERRIACETICA MEDIUM (DSMZ Medium 962)

[Ref.: #5129]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #5129]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5129]			growth	60 °C

[Ref.: #5129]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %97.942

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5129]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69480]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5129]	Sample type/isolated from	ferric deposits of a terrestrial hydrothermal spring
[Ref.: #5129]	Geographic location (country and/or sea, region)	Kunashir Island (Kurils)
[Ref.: #5129]	Country	Russia
[Ref.: #5129]	Country ISO 3 Code	RUS
[Ref.: #5129]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY631277 (>99% sequence identity) for Thermincola potens from Microbeatlas

Aquatic Samples	618
Soil Samples	693
Animal Samples	1851
Plant Samples	164
Total Samples	3326

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5129]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5129]	Thermoincola ferriacetica strain Z-0001 16S ribosomal RNA gene, partial sequence	AY631277	1443	ENA	281456 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermincola ferriacetica Z-0001	GCA_001263415	scaffold	GenBank	281456 tax ID	*
[Ref.: #66792]	Thermincola ferriacetica DSM 14005	2547132462	draft	JGI IMG/M	281456 tax ID	*
[Ref.: #66792]	Thermincola ferriacetica Z-0001	2648501491	draft	JGI IMG/M	281456 tax ID	*

[Ref.: #5129]

GC-content

47.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermincola ferriacetica Z-0001 NCBI: GCA_001263415.1
[Ref.: #69481]	spore-forming	yes	70	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermincola ferriacetica Z-0001 NCBI: GCA_001263415.1
[Ref.: #69480]	motile	yes	78.861	no
[Ref.: #69480]	flagellated	no	92.631	no
[Ref.: #69480]	gram-positive	no	78.348	no
[Ref.: #69480]	anaerobic	yes	98.579	yes
[Ref.: #69480]	aerobic	no	96.441	no
[Ref.: #69480]	halophile	no	96.895	no
[Ref.: #69480]	spore-forming	yes	92.632	no
[Ref.: #69480]	thermophile	yes	87.427	no
[Ref.: #69480]	glucose-util	yes	71.008	no
[Ref.: #69480]	glucose-ferment	no	79.263	no

Availability in culture collections External links

[Ref.: #5129]

Culture collection no.

DSM 14005, VKM B-2307

[Ref.: #81006]

SI-ID 401356

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of the Gram-Positive Thermophilic Iron Reducer Thermincola ferriacetica Strain Z-0001T.	Lusk BG, Badalamenti JP, Parameswaran P, Bond DR, Torres CI	Genome Announc	10.1128/genomeA.01072-15	2015	*
Enzymology	Kinetic, electrochemical, and microscopic characterization of the thermophilic, anode-respiring bacterium Thermincola ferriacetica.	Parameswaran P, Bry T, Popat SC, Lusk BG, Rittmann BE, Torres CI	Environ Sci Technol	10.1021/es400321c	2013	*
Phylogeny	Thermincola ferriacetica sp. nov., a new anaerobic, thermophilic, facultatively chemolithoautotrophic bacterium capable of dissimilatory Fe(III) reduction.	Zavarzina DG, Sokolova TG, Tourova TP, Chernyh NA, Kostrikina NA, Bonch-Osmolovskaya EA	Extremophiles	10.1007/s00792-006-0004-7	2006	*

References

#5129

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14005

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81006

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401356.1 )

* These data were automatically processed and therefore are not curated

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