Archive BacDiveID:10.13145/bacdive11788.20230509.8.1

Strain identifier

BacDive ID: 11788

Type strain:

Species: Thermincola ferriacetica

Strain Designation: Z-0001

Strain history: <- D. G. Zavarzina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Z-0001 <- D. G. Zavarzina {2000}

NCBI tax ID(s): 281456 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 5129

BacDive-ID: 11788

DSM-Number: 14005

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, motile

description: Thermincola ferriacetica Z-0001 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from ferric deposits of a terrestrial hydrothermal spring.

NCBI tax id

NCBI tax id: 281456
Matching level: species

strain history

@ref: 5129
history: <- D. G. Zavarzina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Z-0001 <- D. G. Zavarzina {2000}

doi: 10.13145/bacdive11788.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Peptococcaceae
genus: Thermincola
species: Thermincola ferriacetica
full scientific name: Thermincola ferriacetica Zavarzina et al. 2007

@ref: 5129

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptococcaceae

genus: Thermincola

species: Thermincola ferriacetica

full scientific name: Thermincola ferriacetica Zavarzina et al. 2007

strain designation: Z-0001

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	yes	94.282
69480		99.72	positive

colony morphology

@ref: 5129
incubation period: 2-3 days

Culture and growth conditions

culture medium

@ref: 5129
name: THERMINCOLA FERRIACETICA MEDIUM (DSMZ Medium 962)
growth: yes
link: https://mediadive.dsmz.de/medium/962
composition: Name: THERMINCOLA FERRIACETICA MEDIUM (DSMZ Medium 962) Composition: Na2-9,10-anthraquinone-2,6-disulfonate 7.91296 g/l Na-acetate 2.96736 g/l NaHCO3 2.4728 g/l KCl 0.326409 g/l MgCl2 x 6 H2O 0.326409 g/l KH2PO4 0.326409 g/l NH4Cl 0.326409 g/l Yeast extract 0.049456 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l ZnSO4 x 7 H2O 0.00178042 g/l CoSO4 x 7 H2O 0.00178042 g/l FeSO4 x 7 H2O 0.00098912 g/l CaCl2 x 2 H2O 0.00098912 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l Pyridoxine hydrochloride 9.8912e-05 g/l H3BO3 9.8912e-05 g/l CuSO4 x 5 H2O 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Biotin 1.97824e-05 g/l Folic acid 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

culture temp

@ref	growth	type	temperature	range	confidence
5129	positive	growth	60	thermophilic
69480				thermophilic	97.942

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance	confidence
5129	anaerobe
69480	anaerobe	100

spore formation

@ref: 69480
spore formation: yes
confidence: 100

Isolation, sampling and environmental information

isolation

@ref: 5129
sample type: ferric deposits of a terrestrial hydrothermal spring
geographic location: Kunashir Island (Kurils)
country: Russia
origin.country: RUS
continent: Asia

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial
#Condition	#Thermophilic (>45°C)

taxonmaps

@ref: 69479
File name: preview.99_4701.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_485;96_2334;97_2837;98_3525;99_4701&stattab=map
Last taxonomy: Thermincola potens
16S sequence: AY631277
Sequence Identity:
Total samples: 3326
soil counts: 693
aquatic counts: 618
animal counts: 1851
plant counts: 164

Safety information

risk assessment

@ref: 5129
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 5129
description: Thermoincola ferriacetica strain Z-0001 16S ribosomal RNA gene, partial sequence
accession: AY631277
length: 1443
database: ena
NCBI tax ID: 281456

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Thermincola ferriacetica Z-0001	GCA_001263415	scaffold	ncbi	281456
66792	Thermincola ferriacetica DSM 14005	2547132462	draft	img	281456
66792	Thermincola ferriacetica Z-0001	2648501491	draft	img	281456

GC content

@ref: 5129
GC-content: 47.8

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	yes	70	no
motile	yes	78.861	no
flagellated	no	92.631	no
gram-positive	no	78.348	no
anaerobic	yes	98.579	yes
aerobic	no	96.441	no
halophile	no	96.895	no
spore-forming	yes	92.632	no
thermophile	yes	87.427	no
glucose-util	yes	71.008	no
glucose-ferment	no	79.263	no

External links

@ref: 5129

culture collection no.: DSM 14005, VKM B-2307

straininfo link

@ref: 81006
straininfo: 401356

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	16988758	Thermincola ferriacetica sp. nov., a new anaerobic, thermophilic, facultatively chemolithoautotrophic bacterium capable of dissimilatory Fe(III) reduction.	Zavarzina DG, Sokolova TG, Tourova TP, Chernyh NA, Kostrikina NA, Bonch-Osmolovskaya EA	Extremophiles	10.1007/s00792-006-0004-7	2006	Acetates/metabolism, Carbon Monoxide/metabolism, Chemoautotrophic Growth, DNA, Bacterial, DNA, Ribosomal, Ferric Compounds/metabolism, Gram-Positive Endospore-Forming Rods/classification/genetics/growth & development/isolation & purification/metabolism, Hot Springs/microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Oxidation-Reduction, Peptococcaceae/classification/genetics/growth & development/isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping, Russia, Temperature	Metabolism
Enzymology	23544360	Kinetic, electrochemical, and microscopic characterization of the thermophilic, anode-respiring bacterium Thermincola ferriacetica.	Parameswaran P, Bry T, Popat SC, Lusk BG, Rittmann BE, Torres CI	Environ Sci Technol	10.1021/es400321c	2013	Biofilms, Electrochemical Techniques, Electrodes, Gram-Positive Bacteria/growth & development/*metabolism, Kinetics, Microscopy, Electron, Scanning	Metabolism
Genetics	26404602	Draft Genome Sequence of the Gram-Positive Thermophilic Iron Reducer Thermincola ferriacetica Strain Z-0001T.	Lusk BG, Badalamenti JP, Parameswaran P, Bond DR, Torres CI	Genome Announc	10.1128/genomeA.01072-15	2015

Reference

@id	authors	catalogue	doi/url	title
5129	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14005)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-14005
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
81006	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID401356.1	StrainInfo: A central database for resolving microbial strain identifiers