Name: Thermincola carboxydiphila 2204
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11787

Type strain:

Species: Thermincola carboxydiphila

Strain Designation: 2204

Culture col. no.: DSM 17129, JCM 13258, VKM B-2283

Strain history: <- T. G. Sokolova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; 2204 <- T. G. Sokolova {1997}

NCBI tax ID(s): 278994 (species)

SI-ID 265634

DSM 17129, JCM 13258, VKM B-2283

Section

Thermincola carboxydiphila 2204 is an anaerobe, thermophilic, Gram-positive bacterium that was isolated from hot spring.

Gram-positive
motile
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Thermincola*
	Species	**Thermincola carboxydiphila**
	Full Scientific Name (LPSN)	Thermincola carboxydiphila Sokolova et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31320]	Gram stain	positive
[Ref.: #31320]	Cell length	1.8 µm
[Ref.: #31320]	Cell width	0.5 µm
[Ref.: #31320]	Cell shape	rod-shaped
[Ref.: #31320]	Motility	yes

[Ref.: #31320]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6776]

Culture medium

THERMINCOLA MEDIUM (CO) (DSMZ Medium 1028)

[Ref.: #6776]

Culture medium growth

[Ref.: #6776]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6776]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6776]	growth	55 °C
[Ref.: #31320]	growth	37-68 °C
[Ref.: #31320]	optimum	55 °C

[Ref.: #6776]	Temperature range	thermophilic
[Ref.: #31320]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31320]			optimum	8
[Ref.: #31320]			growth	6.7-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6776]	Oxygen tolerance	anaerobe
[Ref.: #31320]	Oxygen tolerance	anaerobe

[Ref.: #31320]

Ability of spore formation

[Ref.: #31320]

Observation

aggregates in clumps

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6776]	Sample type/isolated from	hot spring
[Ref.: #6776]	Geographic location (country and/or sea, region)	Baikal Lake region
[Ref.: #6776]	Country	Russia
[Ref.: #6776]	Country ISO 3 Code	RUS
[Ref.: #6776]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY603000 (>99% sequence identity) for Thermincola potens from Microbeatlas

Aquatic Samples	618
Soil Samples	693
Animal Samples	1851
Plant Samples	164
Total Samples	3326

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6776]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6776]	Thermincola carboxydiphila strain 2204 16S ribosomal RNA gene, partial sequence	AY603000	1482	ENA	278994 tax ID

[Ref.: #6776]	GC-content	45.4 mol%
[Ref.: #31320]	GC-content	45 mol%

Availability in culture collections External links

[Ref.: #6776]

Culture collection no.

DSM 17129, JCM 13258, VKM B-2283

[Ref.: #81005]

SI-ID 265634

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermincola carboxydiphila gen. nov., sp. nov., a novel anaerobic, carboxydotrophic, hydrogenogenic bacterium from a hot spring of the Lake Baikal area.	Sokolova TG, Kostrikina NA, Chernyh NA, Kolganova TV, Tourova TP, Bonch-Osmolovskaya EA	Int J Syst Evol Microbiol	10.1099/ijs.0.63299-0	2005	*

References

#6776

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17129

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31320

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27635 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81005

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265634.1 )

#27635

IJSEM 2069 2005 ( DOI 10.1099/ijs.0.63299-0 , PubMed 16166711 )

* These data were automatically processed and therefore are not curated

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