Pasteurella testudinis 90-23-79n | Type strain | DSM 23072, ATCC 33688, CCUG 19802, CIP 82.117, NCTC 12150, UCD 90-23-79n | BacDiveID:11741

Strain identifier

BacDive ID: 11741

Type strain:

Species: Pasteurella testudinis

Strain Designation: 90-23-79n

Culture col. no.: DSM 23072, ATCC 33688, CCUG 19802, CIP 82.117, NCTC 12150, UCD 90-23-79n

Strain history: CIP <- 1982, ATCC <- K.P. Snipes, California Univ., USA: strain 90-23-79n

NCBI tax ID(s): 1122938 (strain), 761 (species)

SI-ID 40624

ATCC 33688, CCUG 19802, NCTC 12150, CCM 6219, CIP 82.117, DSM 23072

Section

Pasteurella testudinis 90-23-79n is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from desert tortoise nares Gopherus agassizi.

Gram-negative
aerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Pasteurella*
	Species	**Pasteurella testudinis**
	Full Scientific Name (LPSN)	Pasteurella testudinis Snipes and Biberstein 1982

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #16690]	Type of hemolysis	beta
[Ref.: #16690]	Hemolysis ability	1

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

BHI MEDIUM (DSMZ Medium 215)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #123486]

Culture medium

CIP Medium 118-b

[Ref.: #123486]

Culture medium growth

[Ref.: #123486]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #16690]			growth	37 °C
[Ref.: #38681]			growth	37 °C
[Ref.: #47060]			growth	37 °C

[Ref.: #16690]	Temperature range	mesophilic
[Ref.: #38681]	Temperature range	mesophilic
[Ref.: #47060]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]		adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]		arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68377]		D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]		D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68369]		D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]		D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]		D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]		decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]		esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]		gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]		L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]		malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68377]		maltose ChEBI	+	builds acid from	* from API NH
[Ref.: #68369]		nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68377]		ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68369]		tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #68369]		urea ChEBI	-	hydrolysis	* from API 20NE
		Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	yes	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	+	* from API 20NE

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68369]		arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]		beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #16690]		catalase	+	1.11.1.6
[Ref.: #68369]		cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #16690]		cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]		gelatinase	-		* from API 20NE
[Ref.: #68377]		ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]		proline-arylamidase	-	3.4.11.5	* from API NH
[Ref.: #68369]		urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #16690]	23856	+	+	-	-	-	+	-	+	-	-	-	+/-	+/-	+/-	+/-	-	-	+	-	-	+

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #16690]	6187	+	+	+	+	-	-	+	-	+	-	-	+	-
[Ref.: #16690]	5685	-	+	+	+	+	-	-	+	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16690]	Sample type/isolated from	desert tortoise nares Gopherus agassizi
[Ref.: #16690]	Host species	Gopherus agassizi
[Ref.: #16690]	Geographic location (country and/or sea, region)	southern California, Mojave Desert
[Ref.: #16690]	Country	USA
[Ref.: #16690]	Country ISO 3 Code	USA
[Ref.: #16690]	Continent	North America

[Ref.: #47060]	Sample type/isolated from	Desert tortoise nares;Gopherus agassizi
[Ref.: #47060]	Geographic location (country and/or sea, region)	California,Mojare desert
[Ref.: #47060]	Country	USA
[Ref.: #47060]	Country ISO 3 Code	USA
[Ref.: #47060]	Continent	North America

[Ref.: #123486]	Sample type/isolated from	Desert tortoise, nares
[Ref.: #123486]	Geographic location (country and/or sea, region)	California
[Ref.: #123486]	Country	United States of America
[Ref.: #123486]	Country ISO 3 Code	USA
[Ref.: #123486]	Continent	North America
[Ref.: #123486]	Isolation date	1981
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Host	#Reptilia	-

What are isolation sources categories?

Global distribution of 16S sequence AY362926 (>99% sequence identity) for Pasteurella testudinis subclade from Microbeatlas

Aquatic Samples	79
Soil Samples	10
Animal Samples	544
Plant Samples	2
Total Samples	635

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16690]	Pathogenicity (animal)	yes
[Ref.: #16690]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123486]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16690]	Pasteurella testudinis DSM 23072 strain CCUG 19802 16S ribosomal RNA gene, partial sequence	AY362926	1371	ENA	1122938 tax ID
[Ref.: #20218]	Pasteurella testudinis DSM 23072 strain CCUG 19802 16S ribosomal RNA gene, partial sequence	L06090	1495	ENA	1122938 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pasteurella testudinis DSM 23072	2528768223	draft	JGI IMG/M	1122938 tax ID	*
[Ref.: #66792]	Pasteurella testudinis DSM 23072	GCA_019633665	scaffold	GenBank	1122938 tax ID	*
[Ref.: #66792]	Pasteurella testudinis DSM 23072	GCA_900176075	scaffold	GenBank	1122938 tax ID	*
[Ref.: #66792]	Pasteurella testudinis DSM 23072	1122938.4	wgs	PATRIC	1122938 tax ID	*
[Ref.: #66792]	Pasteurella testudinis DSM 23072 strain DSM 23072	1122938.3	wgs	PATRIC	1122938 tax ID	*
[Ref.: #66792]	Pasteurella testudinis strain NCTC12150	761.3	wgs	PATRIC	761 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pasteurella testudinis DSM 23072 DSM 23072 NCBI: GCA_900176075.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pasteurella testudinis DSM 23072 DSM 23072 NCBI: GCA_019633665.1
[Ref.: #69480]	flagellated	no	89.656	no
[Ref.: #69480]	gram-positive	no	97.981	no
[Ref.: #69480]	anaerobic	no	93.424	no
[Ref.: #69480]	aerobic	no	70.523	yes
[Ref.: #69480]	halophile	no	59.684	no
[Ref.: #69480]	spore-forming	no	98.658	no
[Ref.: #69480]	motile	no	88.78	no
[Ref.: #69480]	thermophile	no	99.25	no
[Ref.: #69480]	glucose-util	no	54.289	yes
[Ref.: #69480]	glucose-ferment	no	50	yes

Availability in culture collections External links

Culture collection no.

DSM 23072, ATCC 33688, CCUG 19802, CIP 82.117, NCTC 12150, UCD 90-23-79n

SI-ID 40624

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Testudinibacter aquarius gen. nov., sp. nov., a member of the family Pasteurellaceae isolated from the oral cavity of freshwater turtles.	Hansen MJ, Pennanen EAE, Bojesen AM, Christensen H, Bertelsen MF	Int J Syst Evol Microbiol	10.1099/ijsem.0.000759	2015	*

References

#16690

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23072

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38681 ; Curators of the CIP;
#47060 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 19802

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#68369

Automatically annotated from API 20NE .

#68377

Automatically annotated from API NH .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80959

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40624.1 )

#123486 Collection of Institut Pasteur ; Curators of the CIP; CIP 82.117
* These data were automatically processed and therefore are not curated

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