Strain identifier
BacDive ID: 11741
Type strain:
Species: Pasteurella testudinis
Strain Designation: 90-23-79n
Strain history: CIP <- 1982, ATCC <- K.P. Snipes, California Univ., USA: strain 90-23-79n
NCBI tax ID(s): 1122938 (strain), 761 (species)
General
@ref: 16690
BacDive-ID: 11741
DSM-Number: 23072
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, animal pathogen
description: Pasteurella testudinis 90-23-79n is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from desert tortoise nares Gopherus agassizi.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1122938 | strain |
761 | species |
strain history
@ref | history |
---|---|
16690 | <- CCUG <- R. Mutters, Marburg, Germany <- ATCC <- K. P. Snipes, UCD |
123486 | CIP <- 1982, ATCC <- K.P. Snipes, California Univ., USA: strain 90-23-79n |
doi: 10.13145/bacdive11741.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Pasteurella
- species: Pasteurella testudinis
- full scientific name: Pasteurella testudinis Snipes and Biberstein 1982
@ref: 16690
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Pasteurella
species: Pasteurella testudinis
full scientific name: Pasteurella testudinis Snipes and Biberstein 1982
strain designation: 90-23-79n
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.987
colony morphology
- @ref: 16690
- type of hemolysis: beta
- hemolysis ability: 1
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
66793 | EM_DSM_23072_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_23072_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_23072_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_23072_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_23072_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16690 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
16690 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
38681 | MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola | yes | Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g) | |
123486 | CIP Medium 118-b | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16690 | positive | growth | 37 | mesophilic |
38681 | positive | growth | 37 | mesophilic |
47060 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 47060
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.999 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | + | energy source |
68369 | 17632 | nitrate | + | reduction |
68377 | 17634 | D-glucose | + | builds acid from |
68377 | 15824 | D-fructose | + | builds acid from |
68377 | 17306 | maltose | + | builds acid from |
68377 | 18257 | ornithine | - | degradation |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
16690 | catalase | + | 1.11.1.6 |
16690 | cytochrome-c oxidase | + | 1.9.3.1 |
68377 | proline-arylamidase | - | 3.4.11.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16690 | + | + | - | - | - | + | - | + | - | - | - | +/- | +/- | +/- | +/- | - | - | + | - | - | + |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16690 | + | + | + | + | - | - | + | - | + | - | - | + | - |
16690 | - | + | + | + | + | - | - | + | - | + | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|---|
16690 | desert tortoise nares Gopherus agassizi | Gopherus agassizi | southern California, Mojave Desert | USA | USA | North America | |
47060 | Desert tortoise nares;Gopherus agassizi | California,Mojare desert | USA | USA | North America | ||
123486 | Desert tortoise, nares | California | United States of America | USA | North America | 1981 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Desert |
#Host | #Reptilia |
taxonmaps
- @ref: 69479
- File name: preview.99_5931.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_2833;97_3484;98_4407;99_5931&stattab=map
- Last taxonomy: Pasteurella testudinis subclade
- 16S sequence: AY362926
- Sequence Identity:
- Total samples: 635
- soil counts: 10
- aquatic counts: 79
- animal counts: 544
- plant counts: 2
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
16690 | yes | 2 | Risk group (German classification) |
123486 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Pasteurella testudinis DSM 23072 strain CCUG 19802 16S ribosomal RNA gene, partial sequence | L06090 | 1495 | ena | 1122938 |
16690 | Pasteurella testudinis DSM 23072 strain CCUG 19802 16S ribosomal RNA gene, partial sequence | AY362926 | 1371 | ena | 1122938 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Pasteurella testudinis NCTC12150 | GCA_900454705 | contig | ncbi | 761 |
66792 | Pasteurella testudinis DSM 23072 | GCA_019633665 | scaffold | ncbi | 1122938 |
66792 | Pasteurella testudinis DSM 23072 | GCA_900176075 | scaffold | ncbi | 1122938 |
66792 | Pasteurella testudinis DSM 23072 | 1122938.4 | wgs | patric | 1122938 |
66792 | Pasteurella testudinis DSM 23072 strain DSM 23072 | 1122938.3 | wgs | patric | 1122938 |
66792 | Pasteurella testudinis strain NCTC12150 | 761.3 | wgs | patric | 761 |
66792 | Pasteurella testudinis NCTC 12150 | 2878651225 | draft | img | 761 |
66792 | Pasteurella testudinis DSM 23072 | 2528768223 | draft | img | 1122938 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 89.656 | no |
gram-positive | no | 97.981 | no |
anaerobic | no | 93.424 | no |
aerobic | no | 70.523 | yes |
halophile | no | 59.684 | no |
spore-forming | no | 98.658 | no |
motile | no | 88.78 | no |
thermophile | no | 99.25 | no |
glucose-util | no | 54.289 | yes |
glucose-ferment | no | 50 | yes |
External links
@ref: 16690
culture collection no.: DSM 23072, ATCC 33688, CCUG 19802, CIP 82.117, NCTC 12150, UCD 90-23-79n
straininfo link
- @ref: 80959
- straininfo: 40624
literature
- topic: Phylogeny
- Pubmed-ID: 26554864
- title: Testudinibacter aquarius gen. nov., sp. nov., a member of the family Pasteurellaceae isolated from the oral cavity of freshwater turtles.
- authors: Hansen MJ, Pennanen EAE, Bojesen AM, Christensen H, Bertelsen MF
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000759
- year: 2015
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Denmark, Fatty Acids/analysis, Fresh Water, Mouth/microbiology, Pasteurellaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Turtles/*microbiology, Ubiquinone/chemistry
- topic2: Transcriptome
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
16690 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23072) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23072 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38681 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/11395 | ||||
47060 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 19802) | https://www.ccug.se/strain?id=19802 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
68369 | Automatically annotated from API 20NE | |||||
68377 | Automatically annotated from API NH | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
80959 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID40624.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123486 | Curators of the CIP | Collection of Institut Pasteur (CIP 82.117) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.117 |