Pasteurella bettyae (DSM 23000, ATCC 23273, CCUG 2042)

Name: Pasteurella bettyae (DSM 23000, ATCC 23273, CCUG 2042)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11742

Type strain

Strain Designation 50, A99 and A271, A99

Culture col. no. DSM 23000 ATCC 23273 CCUG 2042 CDC 41-5568 CIP 102636 4 more

NCBI tax ID(s) 1095749 752

Special Collections DSMZ CCUG CIP

Links

Pasteurella bettyae 50 is a mesophilic prokaryote that was isolated from human Bartholin cyst.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 37981

ATCC 23273,NCTC 10535,CCUG 2042,CIP 102636,DSM 23000

@ref 20215

Last LPSN update 2025-12-16 09:49:40

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Pasteurella

Species Pasteurella bettyae

Full scientific name Pasteurella bettyae corrig. Sneath and Stevens 1990

Synonyms (1)

Pasteurella bettii

BacDive ID	Other strains from **Pasteurella bettyae** (16)	Type strain
134987	P. bettyae CIP 102827
135025	P. bettyae 164.87, CIP 102901
138667	P. bettyae 720.84, CIP 101110
139115	P. bettyae CNP 696, 41-7170, CIP 103824, ATCC 23274, ...
141403	P. bettyae CCUG 1466
141640	P. bettyae CCUG 4222, ATCC 23275, NCTC 10534
141650	P. bettyae CCUG 4391 Ca
141844	P. bettyae CCUG 7734
144895	P. bettyae CCUG 26994, MCCM 00603
145813	P. bettyae CCUG 29662
150299	P. bettyae CCUG 39572
152189	P. bettyae CCUG 46013
154838	P. bettyae CCUG 55370
156708	P. bettyae CCUG 64273
171162	P. bettyae CIMB 05-0402, CRBIP17.128
171163	P. bettyae CIMB 04-5057, CRBIP17.130

Morphology

Cell morphology

@ref	Motility	Confidence
125438		94.165
125438		96.604
125439		91.1

Colony morphology

16645

Type of hemolysisgamma

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16645	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16645	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
40441	MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola		Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
116798	CIP Medium 118-b	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16645	positive	growth	37	mesophilic
40441	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	94.6

Spore formation

@ref	Spore formation	Confidence
125438		91.308
125439		97.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68381	17716 ChEBI	lactose	-	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	-	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	-	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	-	builds acid from	from API rID32STR
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68381	15688 ChEBI	acetoin	-	from API rID32STR

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68381	Alanyl-Phenylalanyl-Proline arylamidase	-		from API rID32STR
68381	alkaline phosphatase	+	3.1.3.1	from API rID32STR
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68382	beta-galactosidase	-	3.2.1.23	from API zym
68377	beta-galactosidase	-	3.2.1.23	from API NH
68381	beta-glucosidase	-	3.2.1.21	from API rID32STR
68382	beta-glucosidase	-	3.2.1.21	from API zym
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
68382	trypsin	-	3.4.21.4	from API zym
68381	urease	-	3.5.1.5	from API rID32STR
68377	urease	-	3.5.1.5	from API NH
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	vitamin K metabolism	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	95.45	21 of 22
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	pentose phosphate pathway	90.91	10 of 11
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	pyrimidine metabolism	84.44	38 of 45
66794	glycine betaine biosynthesis	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	methylglyoxal degradation	80	4 of 5
66794	purine metabolism	78.72	74 of 94
66794	photosynthesis	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	sulfopterin metabolism	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	Entner Doudoroff pathway	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	phenylalanine metabolism	69.23	9 of 13
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	glycolysis	64.71	11 of 17
66794	alanine metabolism	62.07	18 of 29
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	methionine metabolism	57.69	15 of 26
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	glutathione metabolism	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	heme metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	non-pathway related	55.26	21 of 38
66794	oxidative phosphorylation	54.95	50 of 91
66794	proline metabolism	54.55	6 of 11
66794	vitamin B6 metabolism	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	leucine metabolism	53.85	7 of 13
66794	degradation of sugar alcohols	50	8 of 16
66794	ethanol fermentation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	tryptophan metabolism	50	19 of 38
66794	butanoate fermentation	50	2 of 4
66794	tyrosine metabolism	50	7 of 14
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	histidine metabolism	48.28	14 of 29
66794	degradation of sugar acids	48	12 of 25
66794	d-mannose degradation	44.44	4 of 9
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	lysine metabolism	42.86	18 of 42
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	coenzyme M biosynthesis	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	propionate fermentation	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	sulfate reduction	38.46	5 of 13
66794	citric acid cycle	35.71	5 of 14
66794	lipid metabolism	35.48	11 of 31
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	arginine metabolism	33.33	8 of 24
66794	cyanate degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	degradation of pentoses	32.14	9 of 28
66794	d-xylose degradation	27.27	3 of 11
66794	metabolism of disaccharids	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22
66794	nitrate assimilation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
44469	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
44469	-	+	+	-	-	-	-	-	+	-	-	-	+
16645	+	+	+/-	+/-	-	-	-	+	-	-	+	+	-
16645	-	+	+	+/-	+/-	-	-	-	+	-	-	+	+

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
16645	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-
44469	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Host Body-Site	#Urogenital tract

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16645	human Bartholin cyst	Florida	USA	USA	North America
44469	Human bartholin cyst	Florida	USA	USA	North America
116798	Human, Bartholin cyst

Taxonmaps

69479

Global distribution of 16S sequence AY362917 (>99% sequence identity) for Pasteurella bettyae from Microbeatlas

Aquatic Samples	4
Soil Samples	1
Animal Samples	189
Plant Samples
Total Samples	194

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16645	2	Risk group (German classification) According to TRBA 466
116798	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	33787_D01 assembly for Pasteurella bettyae NCTC10535	contig	GCA_900454515	752.3	8116432503	752	68.41
66792	ASM26224v1 assembly for Pasteurella bettyae CCUG 2042	contig	GCA_000262245	1095749.3	2537561960	1095749	63.4

Genome browser: GCA_900454515

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Pasteurella bettyae strain CCUG 2042 T 16S ribosomal RNA gene, partial sequence	L06088	1476		752
16645	Pasteurella bettyae strain CCUG 2042 16S ribosomal RNA gene, partial sequence	AY362917	1362		752

GC content

@ref	GC-content (mol%)	Method
16645	38.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pasteurella bettyae CCUG 2042
NCBI: GCA_000262245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	94.60	no
125439	gram_stain	BacteriaNetⓘ	negative	91.10	no
125439	motility	BacteriaNetⓘ	no	73.30	no
125439	spore_formation	BacteriaNetⓘ	no	97.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pasteurella bettyae CCUG 2042
PATRIC: 1095749.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.60	no
125438	anaerobic	anaerobicⓘ	no	93.05	no
125438	spore-forming	spore-formingⓘ	no	91.31	no
125438	aerobic	aerobicⓘ	no	84.01	no
125438	thermophilic	thermophileⓘ	no	97.99	yes
125438	flagellated	motile2+ⓘ	no	94.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pasteurella bettyae infection requiring finger amputation due to rapid deterioration and tissue damage.	Kitagawa D, Ochi A, Kurimoto T, Kasamatsu T, Shiraishi N, Suzuki S, Shintani Y, Furumori M, Suzuki Y, Nakano A, Nakano R, Yano H, Maeda K, Nomi K, Nakamura F.	IDCases	10.1016/j.idcr.2023.e01791	2023
Genetics	Mass Die-Off of Saiga Antelopes, Kazakhstan, 2015.	Fereidouni S, Freimanis GL, Orynbayev M, Ribeca P, Flannery J, King DP, Zuther S, Beer M, Hoper D, Kydyrmanov A, Karamendin K, Kock R.	Emerg Infect Dis	10.3201/eid2506.180990	2019
Phylogeny	Dominant gut Prevotella copri in gastrectomised non-obese diabetic Goto-Kakizaki rats improves glucose homeostasis through enhanced FXR signalling.	Pean N, Le Lay A, Brial F, Wasserscheid J, Rouch C, Vincent M, Myridakis A, Hedjazi L, Dumas ME, Grundberg E, Lathrop M, Magnan C, Dewar K, Gauguier D.	Diabetologia	10.1007/s00125-020-05122-7	2020

References

#16645	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23000
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40441	; Curators of the CIP;
#44469	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 2042
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68377	Automatically annotated from API NH .
#68381	Automatically annotated from API rID32STR .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116798	Collection of Institut Pasteur ; Curators of the CIP; CIP 102636
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pasteurella bettyae (DSM 23000, ATCC 23273, CCUG 2042)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API NH

API rID32STR

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900454515

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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