Name: Rodentibacter pneumotropicus P 421
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11739

Type strain:

Species: Rodentibacter pneumotropicus

Strain Designation: P 421

Culture col. no.: DSM 21403, ATCC 35149, CCUG 12398, CIP 66.16, JCM 14074, LMG 4224, NCTC 8141, MCCM 00234, BCRC 11902

Strain history: CIP <- 1966, A. Vallée, Inst. Pasteur, Paris, France <- 1950, NCTC <- E. Jawetz, San Francisco, USA

NCBI tax ID(s): 1122936 (strain), 758 (species)

Other strains from Rodentibacter pneumotropicus

Section

Rodentibacter pneumotropicus P 421 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from mouse lung.

Gram-negative
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Rodentibacter*
	Species	**Rodentibacter pneumotropicus**
	Full Scientific Name (LPSN)	Rodentibacter pneumotropicus (Jawetz 1950) Adhikary et al. 2017

Synonym

Pasteurella pneumotropica

Information on morphological and physiological properties Morphology

[Ref.: #43243]	Gram stain	negative
[Ref.: #121914]	Gram stain	negative

[Ref.: #43243]	Motility	no
[Ref.: #121914]	Motility	no

[Ref.: #121914]	Cell shape	rod-shaped

[Ref.: #15688]	Type of hemolysis	gamma
[Ref.: #15688]	Incubation period	1-2 days

[Ref.: #43243]	Type of hemolysis	gamma
[Ref.: #43243]	Colony size	1-2 mm
[Ref.: #43243]	Colony shape	circular
[Ref.: #43243]	Incubation period	1 day
[Ref.: #43243]	Cultivation medium used	Bovine blood agar

[Ref.: #43243]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15688]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #15688]

Culture medium growth

[Ref.: #15688]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15688]

Culture medium composition

expand / minimize

[Ref.: #15688]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #15688]

Culture medium growth

[Ref.: #15688]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15688]

Culture medium composition

expand / minimize

[Ref.: #37613]

Culture medium

MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola

[Ref.: #37613]

Culture medium growth

[Ref.: #37613]

Culture medium composition

expand / minimize

[Ref.: #43243]

Culture medium

Bovine blood agar

[Ref.: #43243]

Culture medium growth

[Ref.: #121914]

Culture medium

CIP Medium 118-b

[Ref.: #121914]

Culture medium growth

[Ref.: #121914]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #43243]

Culture medium

MacConkey agar

[Ref.: #43243]

Culture medium growth

		Temperature
[Ref.: #15688]	growth	37 °C
[Ref.: #37613]	growth	37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #15688]	Temperature range	mesophilic
[Ref.: #37613]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121914]

Oxygen tolerance

facultative anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43243]	(+)-D-arabitol ChEBI	-	builds acid from
[Ref.: #43243]	(+)-D-fucose ChEBI	-	builds acid from
[Ref.: #43243]	(+)-D-glucose ChEBI	+	builds acid from
[Ref.: #43243]	(+)-D-glucose ChEBI	-	builds gas from
[Ref.: #43243]	(+)-D-glycogen	-	builds acid from
[Ref.: #43243]	(-)-D-fructose ChEBI	+	builds acid from
[Ref.: #43243]	(-)-D-fructose ChEBI	-	builds gas from
[Ref.: #43243]	(-)-D-glucose ChEBI	+	builds acid from
[Ref.: #43243]	(-)-D-ribose ChEBI	+	builds acid from
[Ref.: #43243]	(-)-D-sorbitol ChEBI	-	builds acid from
[Ref.: #43243]	(-)-L-sorbose ChEBI	-	builds acid from
[Ref.: #43243]	(-)-L-xylose ChEBI	-	builds acid from
[Ref.: #43243]	amygdalin ChEBI	-	builds acid from
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #43243]	arbutin ChEBI	-	builds acid from
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #43243]	cellobiose ChEBI	-	builds acid from
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	citrate ChEBI	-	carbon source
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #43243]	D-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid, API NH
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	D-galactose ChEBI	+	builds acid from
[Ref.: #43243]	D-galactose ChEBI	-	builds gas from
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid, API NH
[Ref.: #68368]	D-glucose ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #43243]	D-mannose ChEBI	+	builds acid from
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	D-xylose ChEBI	+	builds acid from
[Ref.: #43243]	dextrin ChEBI	+	builds acid from
[Ref.: #43243]	erythritol ChEBI	-	builds acid from
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	esculin ChEBI	-	builds acid from
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	galactarate ChEBI	+	builds acid from
[Ref.: #43243]	galactitol ChEBI	-	builds acid from
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #43243]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	glucose ChEBI	+	fermentation
[Ref.: #43243]	glucose ChEBI	-	fermentation
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	inulin ChEBI	-	builds acid from
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	L-fucose ChEBI	+	builds acid from
[Ref.: #43243]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	lactose ChEBI	-	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #43243]	malonate ChEBI	+	builds base from
[Ref.: #43243]	maltose ChEBI	+	builds acid from
[Ref.: #43243]	maltose ChEBI	-	builds gas from
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid, API NH
[Ref.: #43243]	melezitose ChEBI	-	builds acid from
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	myo-inositol ChEBI	+/-	builds acid from
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43243]	nitrate ChEBI	+	reduction
[Ref.: #121914]	nitrate ChEBI	+	reduction
[Ref.: #121914]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	ribitol ChEBI	-	builds acid from
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	salicin ChEBI	-	builds acid from
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	sucrose ChEBI	+	builds acid from
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #43243]	tetrathionate ChEBI	-	reduction
[Ref.: #43243]	trehalose ChEBI	+	builds acid from
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #43243]	turanose ChEBI	-	builds acid from
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43243]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43243]	tween 80 ChEBI	-	hydrolysis
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #43243]	xylitol ChEBI	-	builds acid from
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43243]	acetoin ChEBI	no
[Ref.: #121914]	indole ChEBI	yes
[Ref.: #43243]	porphyrin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #43243]	acetoin ChEBI	-
[Ref.: #43243]	glucose ChEBI		-
[Ref.: #68368]	acetoin ChEBI	-			* from API 20E
[Ref.: #68368]	indole ChEBI			-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #43243]	alanine aminopeptidase	+
[Ref.: #43243]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68377]	alkaline phosphatase	+	3.1.3.1	* from API NH, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #43243]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #43243]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #43243]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43243]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #43243]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #43243]	beta-galactosidase	+	3.2.1.23
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E, API zym
[Ref.: #43243]	beta-glucosidase	-	3.2.1.21
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #43243]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #43243]	beta-xylosidase	-
[Ref.: #15688]	catalase	+	1.11.1.6
[Ref.: #43243]	catalase	+	1.11.1.6
[Ref.: #121914]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #43243]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #15688]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68377]	gamma-glutamyltransferase	+	2.3.2.2	* from API NH
[Ref.: #43243]	gelatinase	-
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #43243]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #43243]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #121914]	oxidase	+
[Ref.: #43243]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #43243]	urease	+	3.5.1.5
[Ref.: #121914]	urease	+	3.5.1.5
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #45690]	5902	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #121914]	12048	not determinedn.d.	+/-	-	-	-	+	+/-	-	-	-	+	+	+	+	-	-	-	+/-	-	-	-	-	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	+/-

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #15688]	6138	+	+	+	+	-	+	-	+	+	-	+	+	-
[Ref.: #15688]	6137	+	+	+	+	-	+/-	-	+	+	-	+	+	-
[Ref.: #15688]	5735	-	+	+	+	+	-	+	-	+	+	-	+	+
[Ref.: #15688]	5734	-	+	+	+	+	-	+/-	-	+	+	-	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #45690]	2162	-	+	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-
[Ref.: #121914]	13090	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15688]	Sample type/isolated from	mouse lung
[Ref.: #15688]	Country	USA
[Ref.: #15688]	Country ISO 3 Code	USA
[Ref.: #15688]	Continent	North America

[Ref.: #43243]	Sample type/isolated from	mouse samples

[Ref.: #45690]	Sample type/isolated from	Mouse lung
[Ref.: #45690]	Sampling date	1950
[Ref.: #45690]	Geographic location (country and/or sea, region)	San Francisco
[Ref.: #45690]	Country	USA
[Ref.: #45690]	Country ISO 3 Code	USA
[Ref.: #45690]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Mouse lung
[Ref.: #67770]	Geographic location (country and/or sea, region)	San Francisco
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #121914]	Sample type/isolated from	Animal, Mouse, lung
[Ref.: #121914]	Country	United States of America
[Ref.: #121914]	Country ISO 3 Code	USA
[Ref.: #121914]	Continent	North America
[Ref.: #121914]	Isolation date	1950
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Oral cavity and airways	#Lung

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence M75083 (>99% sequence identity) for Rodentibacter pneumotropicus subclade from Microbeatlas

Aquatic Samples	12
Soil Samples	5
Animal Samples	1440
Plant Samples	10
Total Samples	1467

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15688]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121914]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15688]	Rodentibacter pneumotropicus strain NCTC 8141 16S ribosomal RNA gene, partial sequence	AY362924	1356	ENA	758 tax ID
[Ref.: #20218]	Pasteurella pneumotropica partial 16S rRNA gene, strain P421	AJ438681	429	ENA	758 tax ID	*
[Ref.: #20218]	Pasteurella pneumotropica strain NCTC 8141 16S ribosomal RNA gene, partial sequence	M75083	1471	ENA	758 tax ID	*
[Ref.: #20218]	Pasteurella pneumotropica 16S ribosomal RNA gene, partial sequence	AY634677	483	ENA	758 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rodentibacter pneumotropicus DSM 21403	GCA_000379905	scaffold	GenBank	1122936 tax ID
[Ref.: #67770]	Rodentibacter pneumotropicus ATCC 35149	GCA_000730685	contig	GenBank	758 tax ID
[Ref.: #66792]	Pasteurella pneumotropica DSM 21403	1122936.3	wgs	PATRIC	1122936 tax ID	*
[Ref.: #66792]	Pasteurella pneumotropica strain ATCC 35149	758.7	wgs	PATRIC	758 tax ID	*
[Ref.: #66792]	Rodentibacter pneumotropicus ATCC 35149	2585428040	draft	JGI IMG/M	758 tax ID	*
[Ref.: #66792]	Rodentibacter pneumotropicus DSM 21403	2515154191	draft	JGI IMG/M	1122936 tax ID	*

[Ref.: #43243]	GC-content	40 mol%
[Ref.: #15688]	GC-content	40 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pasteurella pneumotropica DSM 21403 PATRIC: 1122936.3
[Ref.: #69480]	motile	no	89.169	no
[Ref.: #69480]	flagellated	no	94.152	yes
[Ref.: #69480]	gram-positive	no	98.255	yes
[Ref.: #69480]	anaerobic	no	96.118	no
[Ref.: #69480]	aerobic	no	86.127	no
[Ref.: #69480]	halophile	no	57.8	no
[Ref.: #69480]	spore-forming	no	98.958	no
[Ref.: #69480]	glucose-util	no	50	no
[Ref.: #69480]	thermophile	no	98.24	no
[Ref.: #69480]	glucose-ferment	yes	66.808	no

Availability in culture collections External links

[Ref.: #15688]

Culture collection no.

DSM 21403, ATCC 35149, CCUG 12398, CIP 66.16, JCM 14074, LMG 4224, NCTC 8141, MCCM 00234, BCRC 11902

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rodentibacter gen. nov. including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp. nov., Rodentibacter myodis sp. nov., Rodentibacter ratti sp. nov., Rodentibacter heidelbergensis sp. nov., Rodentibacter trehalosifermentans sp. nov., Rodentibacter rarus sp. nov., Rodentibacter mrazii and two genomospecies.	Adhikary S, Nicklas W, Bisgaard M, Boot R, Kuhnert P, Waberschek T, Aalbaek B, Korczak B, Christensen H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001866	2017	*
Phylogeny	Identification of a virulence determinant that is conserved in the Jawetz and Heyl biotypes of [Pasteurella] pneumotropica.	Sasaki H, Ishikawa H, Terayama H, Asano R, Kawamoto E, Ishibashi H, Boot R	Pathog Dis	10.1093/femspd/ftw066	2016	*
Genetics	Draft Genome Sequence of the Rodent Opportunistic Pathogen Pasteurella pneumotropica ATCC 35149T.	Sasaki H, Ishikawa H, Asano R, Ueshiba H, Matsumoto T, Boot R, Kawamoto E	Genome Announc	10.1128/genomeA.00771-14	2014	*
Pathogenicity	Pathogenicity of Pasteurella pneumotropica in immunodeficient NOD/ShiJic-scid/Jcl and immunocompetent Crlj:CD1 (ICR) mice.	Kawamoto E, Sasaki H, Okiyama E, Kanai T, Ueshiba H, Ohnishi N, Sawada T, Hayashimoto N, Takakura A, Itoh T	Exp Anim	10.1538/expanim.60.463	2011	*
Enzymology	Molecular and virulence characteristics of an outer membrane-associated RTX exoprotein in Pasteurella pneumotropica.	Sasaki H, Ishikawa H, Sato T, Sekiguchi S, Amao H, Kawamoto E, Matsumoto T, Shirama K	BMC Microbiol	10.1186/1471-2180-11-55	2011	*
Metabolism	Identification and characterization of hemolysin-like proteins similar to RTX toxin in Pasteurella pneumotropica.	Sasaki H, Kawamoto E, Tanaka Y, Sawada T, Kunita S, Yagami K	J Bacteriol	10.1128/JB.01527-08	2009	*
Phylogeny	Ultrastructural characteristics of the external surfaces of Pasteurella pneumotropica from mice and Pasteurella multocida from rabbits.	Kawamoto E, Okiyama E, Sasaki H, Sawada T, Mikazuki K, Ueshiba H	Lab Anim	10.1258/002367707780378087	2007	*
Phylogeny	Genetic diversity on 16S rDNA sequence and phylogenic tree analysis in Pasteurella pneumotropica strains isolated from laboratory animals.	Hayashimoto N, Takakura A, Itoh T	Curr Microbiol	10.1007/s00284-005-4541-6	2005	*
Enzymology	Identification procedure for Pasteurella pneumotropica in microbiologic monitoring of laboratory animals.	Hayashimoto N, Aiba T, Itoh K, Kato M, Kawamoto E, Kiyokawa S, Morichika Y, Muraguchi T, Narita T, Okajima Y, Takakura A, Itoh T	Exp Anim	10.1538/expanim.54.123	2005	*
	Experimental infection studies of Pasteurella pneumotropica and V-factor dependent Pasteurellaceae for F344-rnu rats.	Hayashimoto N, Yasuda M, Ueno M, Goto K, Takakura A	Exp Anim	10.1538/expanim.57.57	2008	*

References

#15688

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21403

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37613 ; Curators of the CIP;

#43243

Sadhana Adhikary, Werner Nicklas, Magne Bisgaard, Ron Boot, Peter Kuhnert, Torsten Waberschek, Bent Aalbaek, Bozena Korczak and Henrik Christensen: Rodentibacter gen. nov. including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp. nov., Rodentibacter myodis sp. nov., Rodentibacter ratti sp. nov., Rodentibacter heidelbergensis sp. nov., Rodentibacter trehalosifermentans sp. nov., Rodentibacter rarus sp. nov., Rodentibacter mrazii and two genomospecies. IJSEM 67: 1793 - 1806 2017 ( DOI 10.1099/ijsem.0.001866 , PubMed 28629498 )

#45690 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12398

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68371

Automatically annotated from API 50CH acid .

#68377

Automatically annotated from API NH .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#121914 Collection of Institut Pasteur ; Curators of the CIP; CIP 66.16
* These data were automatically processed and therefore are not curated

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Pasteurella pneumotropica DSM 21403

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