Rodentibacter pneumotropicus (DSM 21403, ATCC 35149, CCUG 12398)

Name: Rodentibacter pneumotropicus (DSM 21403, ATCC 35149, CCUG 12398)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11739

Type strain

Strain Designation P 421

Culture col. no. DSM 21403 ATCC 35149 CCUG 12398 CIP 66.16 JCM 14074 5 more

NCBI tax ID(s) 1122936 758

Special Collections DSMZ CCUG JCM CIP Literature strains

History <- JCM/RIKEN; P 421 {2007} <- CCUG <- W. Frederiksen <- E. Jawetz CCUG 12398 <-- W. Frederiksen P421. CIP <- 1966, A. Vallée, Inst. Pasteur, Paris, France <- 1950, NCTC <- E. Jawetz, San Francisco, USA

Links

Rodentibacter pneumotropicus P 421 is a facultative anaerobe, Gram-negative bacterium that was isolated from mouse lung.

Gram-negative facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13743

LMG 4224,ATCC 35149,CCM 5775,CCUG 12398,NCTC 8141,LMG 1225,ATCC 17440,CCUG 726,CECT 318,JCM 5968,NCIB 9946,NCPPB 1971,NCTC 10860,CIP 6614,IMET 11177,CCRC 11902,NCIMB 9946,IFO14167,CCM 3467,VKM B-1300,CIP 66.14,CFBP 2435,AS 1.1806,NBRC 14167,NCCB 76045,LMD 76.45,BCRC 11902,NCAIM B.01176,NCAIM B.02048,NCIM 2864,CCUG 51525,JCM 14074,CIP 66.16,CGMCC 1.1806,VTT E-012029,DSM 50188,DSM 21403

@ref 20215

Last LPSN update 2026-02-09 11:20:38

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Rodentibacter

Species Rodentibacter pneumotropicus

Full scientific name Rodentibacter pneumotropicus (Jawetz 1950) Adhikary et al. 2017

Synonyms (1)

Pasteurella pneumotropica

BacDive ID	Other strains from **Rodentibacter pneumotropicus** (29)	Type strain
135646	R. pneumotropicus 691, CIP 66.30
137167	R. pneumotropicus P315, CNP 160, CIP 103828, CCM 5777
137551	R. pneumotropicus 1020.83, CIP 100630
137840	R. pneumotropicus 821-84, CIP 101195
142680	R. pneumotropicus CCUG 13792
144747	R. pneumotropicus CCUG 26450, MCCM 00004
144748	R. pneumotropicus CCUG 26451, MCCM 00003
144749	R. pneumotropicus CCUG 26452, MCCM 00001
144750	R. pneumotropicus CCUG 26453, MCCM 00252
144751	R. pneumotropicus CCUG 26454, MCCM 00253
145007	R. pneumotropicus CCUG 27374
145258	R. pneumotropicus CCUG 27998, CNCTC Papn 1/70
145732	R. pneumotropicus CCUG 29427
146554	R. pneumotropicus CCUG 31422
146555	R. pneumotropicus CCUG 31423
148952	R. pneumotropicus CCUG 36632
148990	R. pneumotropicus CCUG 36687
150130	R. pneumotropicus CCUG 39056
150292	R. pneumotropicus CCUG 39527
150323	R. pneumotropicus CCUG 39650
150354	R. pneumotropicus CCUG 39714
150355	R. pneumotropicus CCUG 39715
150797	R. pneumotropicus CCUG 42369
151135	R. pneumotropicus CCUG 43344
151847	R. pneumotropicus CCUG 45043
151949	R. pneumotropicus CCUG 45307
152445	R. pneumotropicus CCUG 46803
152527	R. pneumotropicus CCUG 47007
152528	R. pneumotropicus CCUG 47008

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
43243	negative
121914	negative	rod-shaped
125438			95.988
125438	negative		97.415
125439	negative		93.9

Colony morphology

@ref	Type of hemolysis	Colony size	Colony shape	Incubation period	Medium used
15688	gamma			1-2 days
43243	gamma	1-2 mm	circular	1 day	Bovine blood agar

Pigmentation

43243

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15688	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
15688	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
37613	MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola		Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
43243	Bovine blood agar
121914	CIP Medium 118-b	Medium recipe at CIP
43243	MacConkey agar

Culture temp

@ref	Growth	Type	Temperature (°C)
15688	positive	growth	37
37613	positive	growth	37
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
121914	facultative anaerobe
125439	microaerophile	92.4

Spore formation

@ref	Spore formation	Confidence
125438		93.197
125439		97.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43243	18333 ChEBI	(+)-D-arabitol	-	builds acid from
43243	28847 ChEBI	(+)-D-fucose	-	builds acid from
43243	17634 ChEBI	(+)-D-glucose	+	builds acid from
43243	17634 ChEBI	(+)-D-glucose	-	builds gas from
43243		(+)-D-glycogen	-	builds acid from
43243	48095 ChEBI	(-)-D-fructose	+	builds acid from
43243	48095 ChEBI	(-)-D-fructose	-	builds gas from
43243	17634 ChEBI	(-)-D-glucose	+	builds acid from
43243	16988 ChEBI	(-)-D-ribose	+	builds acid from
43243	17924 ChEBI	(-)-D-sorbitol	-	builds acid from
43243	17266 ChEBI	(-)-L-sorbose	-	builds acid from
43243	65328 ChEBI	(-)-L-xylose	-	builds acid from
43243	27613 ChEBI	amygdalin	-	builds acid from
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
43243	18305 ChEBI	arbutin	-	builds acid from
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
43243	17057 ChEBI	cellobiose	-	builds acid from
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
43243	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
43243	17108 ChEBI	D-arabinose	-	builds acid from
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
43243	12936 ChEBI	D-galactose	+	builds acid from
43243	12936 ChEBI	D-galactose	-	builds gas from
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
43243	16899 ChEBI	D-mannitol	-	builds acid from
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
43243	16024 ChEBI	D-mannose	+	builds acid from
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
43243	65327 ChEBI	D-xylose	+	builds acid from
43243	23652 ChEBI	dextrin	+	builds acid from
43243	17113 ChEBI	erythritol	-	builds acid from
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
43243	4853 ChEBI	esculin	-	builds acid from
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
43243	16537 ChEBI	galactarate	+	builds acid from
43243	16813 ChEBI	galactitol	-	builds acid from
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
43243	28066 ChEBI	gentiobiose	-	builds acid from
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
43243	17234 ChEBI	glucose	+	fermentation
43243	17234 ChEBI	glucose	-	fermentation
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
43243	15443 ChEBI	inulin	-	builds acid from
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
43243	30849 ChEBI	L-arabinose	-	builds acid from
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
43243	18287 ChEBI	L-fucose	+	builds acid from
43243	62345 ChEBI	L-rhamnose	-	builds acid from
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
43243	17716 ChEBI	lactose	-	builds acid from
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
43243	15792 ChEBI	malonate	+	builds base from
43243	17306 ChEBI	maltose	+	builds acid from
43243	17306 ChEBI	maltose	-	builds gas from
68377	17306 ChEBI	maltose	+	builds acid from	from API NH
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
43243	6731 ChEBI	melezitose	-	builds acid from
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
43243	17268 ChEBI	myo-inositol	+/-	builds acid from
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
43243	17632 ChEBI	nitrate	+	reduction
121914	17632 ChEBI	nitrate	+	reduction
121914	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
43243	15963 ChEBI	ribitol	-	builds acid from
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
43243	17814 ChEBI	salicin	-	builds acid from
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
43243	17992 ChEBI	sucrose	+	builds acid from
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
43243	15226 ChEBI	tetrathionate	-	reduction
43243	27082 ChEBI	trehalose	+	builds acid from
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
43243	32528 ChEBI	turanose	-	builds acid from
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
43243	53424 ChEBI	tween 20	-	hydrolysis
43243	53426 ChEBI	tween 80	-	hydrolysis
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
43243	17151 ChEBI	xylitol	-	builds acid from
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite
43243	15688 ChEBI	acetoin
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
121914	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E
43243	8337 ChEBI	porphyrin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
43243	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
43243	17234 ChEBI	glucose		-
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
43243	alanine aminopeptidase	+
43243	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68377	alkaline phosphatase	+	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
43243	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
43243	alpha-galactosidase	+/-	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
43243	alpha-glucosidase	+	3.2.1.20
43243	alpha-mannosidase	-	3.2.1.24
68382	alpha-mannosidase	-	3.2.1.24	from API zym
43243	arginine dihydrolase	-	3.5.3.6
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
43243	beta-galactosidase	+	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68368	beta-galactosidase	-	3.2.1.23	from API 20E
43243	beta-glucosidase	-	3.2.1.21
68382	beta-glucosidase	-	3.2.1.21	from API zym
43243	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
43243	beta-xylosidase	-
15688	catalase	+	1.11.1.6
43243	catalase	+	1.11.1.6
121914	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
43243	cytochrome oxidase	+	1.9.3.1
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
15688	cytochrome-c oxidase	+	1.9.3.1
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68377	gamma-glutamyltransferase	+	2.3.2.2	from API NH
43243	gelatinase	-
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
43243	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
43243	ornithine decarboxylase	+	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
121914	oxidase	+
43243	phenylalanine deaminase	-	4.3.1.5
68382	trypsin	-	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
43243	urease	+	3.5.1.5
121914	urease	+	3.5.1.5
68368	urease	+	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
45690	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
45690	-	+	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-
121914	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121914	not determinedn.d.	+/-	-	-	-	+	+/-	-	-	-	+	+	+	+	-	-	-	+/-	-	-	-	-	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	+/-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
15688	+	+	+	+	-	+	-	+	+	-	+	+	-
15688	+	+	+	+	-	+/-	-	+	+	-	+	+	-
15688	-	+	+	+	+	-	+	-	+	+	-	+	+
15688	-	+	+	+	+	-	+/-	-	+	+	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Oral cavity and airways	#Lung

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
15688	mouse lung			USA	USA	North America
43243	mouse samples
45690	Mouse lung	1950	San Francisco	USA	USA	North America
67770	Mouse lung		San Francisco	USA	USA	North America
121914	Animal, Mouse, lung			United States of America	USA	North America	1950

Taxonmaps

69479

Global distribution of 16S sequence M75083 (>99% sequence identity) for Rodentibacter pneumotropicus subclade from Microbeatlas

Aquatic Samples	12
Soil Samples	5
Animal Samples	1440
Plant Samples	10
Total Samples	1467

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15688	2	Risk group (German classification) According to TRBA 466
121914	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM73068v1 assembly for Rodentibacter pneumotropicus ATCC 35149	contig	GCA_000730685	758.7	2585428040	758	76.54
67770	ASM37990v1 assembly for Rodentibacter pneumotropicus DSM 21403	scaffold	GCA_000379905	1122936.3	2515154191	1122936	74.85

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pasteurella pneumotropica partial 16S rRNA gene, strain P421	AJ438681	429	758
20218	Pasteurella pneumotropica 16S ribosomal RNA gene, partial sequence	AY634677	483	758
20218	Pasteurella pneumotropica strain NCTC 8141 16S ribosomal RNA gene, partial sequence	M75083	1471	758
15688	Rodentibacter pneumotropicus strain NCTC 8141 16S ribosomal RNA gene, partial sequence	AY362924	1356	758
124043	Rodentibacter pneumotropicus strain ATCC 35149 16S ribosomal RNA gene, partial sequence.	MN738483	520	758

GC content

@ref	GC-content (mol%)	Method
43243	40
15688	40	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Rodentibacter pneumotropicus DSM 21403
NCBI: GCA_000379905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	92.40	no
125439	gram_stain	BacteriaNetⓘ	negative	93.90	no
125439	motility	BacteriaNetⓘ	no	68.80	no
125439	spore_formation	BacteriaNetⓘ	no	97.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pasteurella pneumotropica DSM 21403
PATRIC: 1122936.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.42	no
125438	anaerobic	anaerobicⓘ	no	93.86	yes
125438	spore-forming	spore-formingⓘ	no	93.20	no
125438	aerobic	aerobicⓘ	no	86.42	yes
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	no	95.99	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The Genomic Sequence of the Oral Pathobiont Strain NI1060 Reveals Unique Strategies for Bacterial Competition and Pathogenicity.	Darzi Y, Jiao Y, Hasegawa M, Moon H, Nunez G, Inohara N, Raes J.	PLoS One	10.1371/journal.pone.0158866	2016
Enzymology	Severe pneumonia in a street rat (Rattus norvegicus) caused by Rodentibacter rarus strain RMC2.	Medkour H, Laidoudi Y, Dahmana H, Salvi B, Lepidi H, Mediannikov O, Davoust B.	Open Vet J	10.4314/ovj.v11i1.24	2021
Enzymology	The Likelihood of Misidentifying Rodent Pasteurellaceae by Using Results from a Single PCR Assay.	Dafni H, Greenfeld L, Oren R, Harmelin A.	J Am Assoc Lab Anim Sci	10.30802/aalas-jaalas-18-000049	2019
Metabolism	Comparative analysis of humoral immune responses and pathologies of BALB/c and C57BL/6 wildtype mice experimentally infected with a highly virulent Rodentibacter pneumotropicus (Pasteurella pneumotropica) strain.	Fornefett J, Krause J, Klose K, Fingas F, Hassert R, Benga L, Grunwald T, Muller U, Schrodl W, Baums CG.	BMC Microbiol	10.1186/s12866-018-1186-8	2018
	Rational Use of Danofloxacin for Treatment of Mycoplasma gallisepticum in Chickens Based on the Clinical Breakpoint and Lung Microbiota Shift.	Wang S, Huang A, Gu Y, Li J, Huang L, Wang X, Tao Y, Liu Z, Wu C, Yuan Z, Hao H.	Antibiotics (Basel)	10.3390/antibiotics11030403	2022
Phylogeny	A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
Enzymology	Rapid and accurate identification of human isolates of Pasteurella and related species by sequencing the sodA gene.	Gautier AL, Dubois D, Escande F, Avril JL, Trieu-Cuot P, Gaillot O.	J Clin Microbiol	10.1128/jcm.43.5.2307-2314.2005	2005
	Single-tube Multiplex Nested PCR System for Efficient Detection of Pathogenic Microorganisms in SPF Rodents.	Xu WJ, Pan YJ, Li WJ, Peng LN, Liang DL, Zhang M, Ding W, Wang ZX.	J Am Assoc Lab Anim Sci	10.30802/aalas-jaalas-21-000117	2022
	Application of a comprehensive approach to pathogen screening in a stowaway rat on an airplane	Heuser E, Ebinger A, Holtfreter S, Wolf S, Zautner A, Ryll R, Drewes S, Matzkeit B, Hoffmann B, Hoper D, Keller M, Groseth A, Wilharm G, Mrochen D, Obiegala A, Doss F, Mehl C, Eisenberg T, Niendorf S, Bottcher S, Karger A, Schroder C, Ehrke-Schulz E, Schmidt K, Beer M, Groschup M, Semmler T, Heckel G, Pfeffer M, Wylezich C, Ulrich R.	Sci Rep		2025
Enzymology	High-Resolution Melting Curve Analysis for Identification of Pasteurellaceae Species in Experimental Animal Facilities.	Miller M, Zorn J, Brielmeier M.	PLoS One	10.1371/journal.pone.0142560	2015
Enzymology	Assessment of rpoB and 16S rRNA genes as targets for PCR-based identification of Pasteurella pneumotropica.	Dole VS, Banu LA, Fister RD, Nicklas W, Henderson KS.	Comp Med		2010
Phylogeny	Identification of a virulence determinant that is conserved in the Jawetz and Heyl biotypes of [Pasteurella] pneumotropica.	Sasaki H, Ishikawa H, Terayama H, Asano R, Kawamoto E, Ishibashi H, Boot R	Pathog Dis	10.1093/femspd/ftw066	2016
Genetics	Draft Genome Sequence of the Rodent Opportunistic Pathogen Pasteurella pneumotropica ATCC 35149T.	Sasaki H, Ishikawa H, Asano R, Ueshiba H, Matsumoto T, Boot R, Kawamoto E	Genome Announc	10.1128/genomeA.00771-14	2014
Pathogenicity	Pathogenicity of Pasteurella pneumotropica in immunodeficient NOD/ShiJic-scid/Jcl and immunocompetent Crlj:CD1 (ICR) mice.	Kawamoto E, Sasaki H, Okiyama E, Kanai T, Ueshiba H, Ohnishi N, Sawada T, Hayashimoto N, Takakura A, Itoh T	Exp Anim	10.1538/expanim.60.463	2011
Enzymology	Molecular and virulence characteristics of an outer membrane-associated RTX exoprotein in Pasteurella pneumotropica.	Sasaki H, Ishikawa H, Sato T, Sekiguchi S, Amao H, Kawamoto E, Matsumoto T, Shirama K	BMC Microbiol	10.1186/1471-2180-11-55	2011
Metabolism	Identification and characterization of hemolysin-like proteins similar to RTX toxin in Pasteurella pneumotropica.	Sasaki H, Kawamoto E, Tanaka Y, Sawada T, Kunita S, Yagami K	J Bacteriol	10.1128/JB.01527-08	2009
	Experimental infection studies of Pasteurella pneumotropica and V-factor dependent Pasteurellaceae for F344-rnu rats.	Hayashimoto N, Yasuda M, Ueno M, Goto K, Takakura A	Exp Anim	10.1538/expanim.57.57	2008
Phylogeny	Ultrastructural characteristics of the external surfaces of Pasteurella pneumotropica from mice and Pasteurella multocida from rabbits.	Kawamoto E, Okiyama E, Sasaki H, Sawada T, Mikazuki K, Ueshiba H	Lab Anim	10.1258/002367707780378087	2007
Phylogeny	Genetic diversity on 16S rDNA sequence and phylogenic tree analysis in Pasteurella pneumotropica strains isolated from laboratory animals.	Hayashimoto N, Takakura A, Itoh T	Curr Microbiol	10.1007/s00284-005-4541-6	2005
Enzymology	Identification procedure for Pasteurella pneumotropica in microbiologic monitoring of laboratory animals.	Hayashimoto N, Aiba T, Itoh K, Kato M, Kawamoto E, Kiyokawa S, Morichika Y, Muraguchi T, Narita T, Okajima Y, Takakura A, Itoh T	Exp Anim	10.1538/expanim.54.123	2005
Phylogeny	Rodentibacter gen. nov. including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp. nov., Rodentibacter myodis sp. nov., Rodentibacter ratti sp. nov., Rodentibacter heidelbergensis sp. nov., Rodentibacter trehalosifermentans sp. nov., Rodentibacter rarus sp. nov., Rodentibacter mrazii and two genomospecies.	Adhikary S, Nicklas W, Bisgaard M, Boot R, Kuhnert P, Waberschek T, Aalbaek B, Korczak B, Christensen H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001866	2017

References

#15688	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21403
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37613	; Curators of the CIP;
#43243	Sadhana Adhikary, Werner Nicklas, Magne Bisgaard, Ron Boot, Peter Kuhnert, Torsten Waberschek, Bent Aalbaek, Bozena Korczak and Henrik Christensen: Rodentibacter gen. nov. including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp. nov., Rodentibacter myodis sp. nov., Rodentibacter ratti sp. nov., Rodentibacter heidelbergensis sp. nov., Rodentibacter trehalosifermentans sp. nov., Rodentibacter rarus sp. nov., Rodentibacter mrazii and two genomospecies. IJSEM 67: 1793 - 1806 2017 ( DOI 10.1099/ijsem.0.001866 , PubMed 28629498 )
#45690	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12398
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121914	Collection of Institut Pasteur ; Curators of the CIP; CIP 66.16
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rodentibacter pneumotropicus (DSM 21403, ATCC 35149, CCUG 12398)

Name and taxonomic classification

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