Name: Canicola haemoglobinophilus 375
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11712

Type strain:

Species: Canicola haemoglobinophilus

Strain Designation: 375, XII

Culture col. no.: DSM 21241, ATCC 19416, CCUG 3714, CIP 53.88, NCTC 1659

Strain history: CIP <- 1953, NCTC, Haemophilus canis <- 1923, P. Fildes, London, UK <- 1922, M. Kristensen, Copenhagen, Denmark <- E. Friedberger: strain XII <- H.K. Killian: strain 375

NCBI tax ID(s): 733 (species)

SI-ID 389262

ATCC 19416, NCTC 1659, CCUG 3714, CIP 53.88, CNCTC 5400, DSM 21241

Special Collections

Section

Canicola haemoglobinophilus 375 is a microaerophile, Gram-negative bacterium that was isolated from dog, prepuce.

Gram-negative
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Canicola*
	Species	**Canicola haemoglobinophilus**
	Full Scientific Name (LPSN)	Canicola haemoglobinophilus (Lehmann and Neumann 1907) Christensen et al. 2021

	Synonym	"Bacterium* haemoglobinophilus"*
	Synonym	Haemophilus haemoglobinophilus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.603

[Ref.: #69480]	Motility	no Confidence in %94.863

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15589]

Culture medium

CHOCOLATE AGAR (DSMZ Medium 429b)

[Ref.: #15589]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #15589]

Culture medium composition

expand / minimize

[Ref.: #37738]

Culture medium

MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria

[Ref.: #37738]

Culture medium growth

[Ref.: #37738]

Culture medium composition

expand / minimize

[Ref.: #119763]

Culture medium

CIP Medium 10

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Culture medium growth

[Ref.: #119763]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #15589]			growth	37 °C
[Ref.: #37738]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15589]

Oxygen tolerance

microaerophile

[Ref.: #69480]	Ability of spore formation	no Confidence in %93.457
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH
[Ref.: #68377]	lipase	-		* from API NH
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]	proline-arylamidase	-	3.4.11.5	* from API NH
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #15589]	6135	+	+	-	+	-	-	-	-	-	-	-	+	-
[Ref.: #15589]	5737	-	+	+	-	+	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15589]	Sample type/isolated from	dog, prepuce
[Ref.: #15589]	Country	Denmark
[Ref.: #15589]	Country ISO 3 Code	DNK
[Ref.: #15589]	Continent	Europe

[Ref.: #44684]	Sample type/isolated from	Dog prepuce
[Ref.: #44684]	Geographic location (country and/or sea, region)	Copenhagen ?
[Ref.: #44684]	Country	Denmark
[Ref.: #44684]	Country ISO 3 Code	DNK
[Ref.: #44684]	Continent	Europe

[Ref.: #119763]	Sample type/isolated from	Animal, Dog, prepuce
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Urogenital tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence M75064 (>99% sequence identity) for Haemophilus haemoglobinophilus subclade from Microbeatlas

Aquatic Samples	47
Soil Samples	9
Animal Samples	785
Plant Samples	5
Total Samples	846

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15589]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119763]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15589]	Canicola haemoglobinophilus strain CCUG 3714 16S ribosomal RNA gene, partial sequence	AY362907	1360	GenBank ENA	733 tax ID
[Ref.: #20218]	Haemophilus haemoglobinophilus strain NCTC 1659 16S ribosomal RNA gene, partial sequence	M75064	1476	GenBank ENA	733 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Canicola haemoglobinophilus NCTC1659	GCA_900450725	contig	GenBank ENA	733 tax ID	*
[Ref.: #66792]	Canicola haemoglobinophilus CCUG 3714	GCA_002015075	scaffold	GenBank ENA	733 tax ID	*
[Ref.: #66792]	Haemophilus haemoglobinophilus strain CCUG 3714	733.3	wgs	PATRIC	733 tax ID	*
[Ref.: #66792]	Haemophilus haemoglobinophilus strain NCTC1659	733.4	wgs	PATRIC	733 tax ID	*
[Ref.: #66792]	Haemophilus haemoglobinophilus CCUG 3714	2916265895	draft	JGI IMG/M	733 tax ID	*
[Ref.: #66792]	Haemophilus haemoglobinophilus NCTC 1659	2906570301	draft	JGI IMG/M	733 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Haemophilus haemoglobinophilus strain CCUG 3714 PATRIC: 733.6
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Canicola haemoglobinophilus CCUG 3714 NCBI: GCA_002015075.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.603	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.226	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	78.919	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.457	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94.863	no

Availability in culture collections External links

[Ref.: #15589]

Culture collection no.

DSM 21241, ATCC 19416, CCUG 3714, CIP 53.88, NCTC 1659

[Ref.: #80931]

SI-ID 389262

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of [Haemophilus] haemoglobinophilus as Canicola haemoglobinophilus gen. nov., comb. nov. including Bisgaard taxon 35.	Christensen H, Kuhnert P, Foster G, Bisgaard M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004881	2021	*

References

#15589

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21241

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37738 ; Curators of the CIP;
#44684 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 3714

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80931

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389262.1 )

#119763 Collection of Institut Pasteur ; Curators of the CIP; CIP 53.88
* These data were automatically processed and therefore are not curated

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Haemophilus haemoglobinophilus strain CCUG 3714

Canicola haemoglobinophilus CCUG 3714

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