Strain identifier

BacDive ID: 11712

Type strain: Yes

Species: Canicola haemoglobinophilus

Strain Designation: 375, XII

Strain history: CIP <- 1953, NCTC, Haemophilus canis <- 1923, P. Fildes, London, UK <- 1922, M. Kristensen, Copenhagen, Denmark <- E. Friedberger: strain XII <- H.K. Killian: strain 375

NCBI tax ID(s): 733 (species)

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General

@ref: 15589

BacDive-ID: 11712

DSM-Number: 21241

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Canicola haemoglobinophilus 375 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from dog, prepuce.

NCBI tax id

  • NCBI tax id: 733
  • Matching level: species

strain history

@refhistory
15589<- CIP
119763CIP <- 1953, NCTC, Haemophilus canis <- 1923, P. Fildes, London, UK <- 1922, M. Kristensen, Copenhagen, Denmark <- E. Friedberger: strain XII <- H.K. Killian: strain 375

doi: 10.13145/bacdive11712.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Canicola
  • species: Canicola haemoglobinophilus
  • full scientific name: Canicola haemoglobinophilus (Lehmann and Neumann 1907) Christensen et al. 2021

  • synonyms

    @refsynonym
    20215Bacterium haemoglobinophilus
    20215Haemophilus haemoglobinophilus

@ref: 15589

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Haemophilus

species: Haemophilus haemoglobinophilus

full scientific name: Haemophilus haemoglobinophilus (Lehmann and Neumann 1907) Murray 1939

strain designation: 375, XII

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.925

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15589CHOCOLATE AGAR (DSMZ Medium 429b)yeshttps://mediadive.dsmz.de/medium/429bName: CHOCOLATE AGAR (DSMZ Medium 429b) Composition: Horse blood 100.0 g/l Sheep blood 100.0 g/l Columbia agar base
37738MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
119763CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperaturerange
15589positivegrowth37mesophilic
37738positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 15589
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.995

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis

enzymes

@refvalueactivityec
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
15589++-+-------+-
15589-++-+-------+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
15589dog, prepuceDenmarkDNKEurope
44684Dog prepuceDenmarkDNKEuropeCopenhagen ?
119763Animal, Dog, prepuce

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Canidae (Dog)
#Host Body-Site#Urogenital tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_5435.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_2637;97_3230;98_4058;99_5435&stattab=map
  • Last taxonomy: Haemophilus haemoglobinophilus subclade
  • 16S sequence: M75064
  • Sequence Identity:
  • Total samples: 846
  • soil counts: 9
  • aquatic counts: 47
  • animal counts: 785
  • plant counts: 5

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
155892Risk group (German classification)
1197632Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haemophilus haemoglobinophilus strain NCTC 1659 16S ribosomal RNA gene, partial sequenceM750641476ena733
15589Haemophilus haemoglobinophilus strain CCUG 3714 16S ribosomal RNA gene, partial sequenceAY3629071360ena733

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Canicola haemoglobinophilus NCTC1659GCA_900450725contigncbi733
66792Canicola haemoglobinophilus CCUG 3714GCA_002015075scaffoldncbi733
66792Haemophilus haemoglobinophilus strain CCUG 3714733.3wgspatric733
66792Haemophilus haemoglobinophilus strain NCTC1659733.4wgspatric733
66792Haemophilus haemoglobinophilus CCUG 37142916265895draftimg733
66792Haemophilus haemoglobinophilus NCTC 16592906570301draftimg733

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno96.163no
gram-positiveno98.457no
anaerobicno96.253no
aerobicno92.836yes
halophileno50no
spore-formingno98.779no
glucose-utilno50no
thermophileno98.117yes
motileno89.734no
glucose-fermentyes57.15no

External links

@ref: 15589

culture collection no.: DSM 21241, ATCC 19416, CCUG 3714, CIP 53.88, NCTC 1659

straininfo link

  • @ref: 80931
  • straininfo: 389262

literature

  • topic: Phylogeny
  • Pubmed-ID: 34264807
  • title: Reclassification of [Haemophilus] haemoglobinophilus as Canicola haemoglobinophilus gen. nov., comb. nov. including Bisgaard taxon 35.
  • authors: Christensen H, Kuhnert P, Foster G, Bisgaard M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004881
  • year: 2021
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dogs/microbiology, Genes, Bacterial, Germany, Haemophilus/*classification, Pasteurellaceae/*classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15589Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21241)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21241
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37738Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16245
44684Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 3714)https://www.ccug.se/strain?id=3714
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80931Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389262.1StrainInfo: A central database for resolving microbial strain identifiers
119763Curators of the CIPCollection of Institut Pasteur (CIP 53.88)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.88