Name: Paenibacillus glacialis DSM 22343
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11648

Type strain:

Species: Paenibacillus glacialis

Culture col. no.: DSM 22343, NCCB 100252, KFC 91, CIP 110200

Strain history: CIP <- 2010, S. Shivaji, CCMB, Hyderabad, India: strain KFC91

NCBI tax ID(s): 494026 (species)

SI-ID 370340

DSM 22343, NCCB 100252, CIP 110200

Special Collections

Section

Paenibacillus glacialis DSM 22343 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil sample.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus glacialis**
	Full Scientific Name (LPSN)	Paenibacillus glacialis Kishore et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29534]	Gram stain	positive
[Ref.: #119631]	Gram stain	positive

[Ref.: #29534]	Cell length	2.2 µm

[Ref.: #29534]	Cell width	0.5 µm

[Ref.: #29534]	Cell shape	rod-shaped
[Ref.: #119631]	Cell shape	rod-shaped

[Ref.: #29534]	Motility	yes
[Ref.: #119631]	Motility	yes

[Ref.: #29534]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37578]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37578]

Culture medium growth

[Ref.: #37578]

Culture medium composition

expand / minimize

[Ref.: #119631]

Culture medium

CIP Medium 72

[Ref.: #119631]

Culture medium growth

[Ref.: #119631]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #29534]	growth	04-30 °C
[Ref.: #29534]	optimum	22 °C
[Ref.: #37578]	growth	20 °C

	pH	Kind of pH		pH
[Ref.: #29534]			optimum	7
[Ref.: #29534]			growth	6-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29534]	Oxygen tolerance	aerobe
[Ref.: #119631]	Oxygen tolerance	facultative anaerobe

[Ref.: #29534]	Ability of spore formation	yes
[Ref.: #119631]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %95.158
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29534]		NaCl		growth	0-2	%
[Ref.: #29534]		NaCl		optimum	0-2	%

[Ref.: #29534]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29534]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29534]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29534]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #119631]	nitrate ChEBI	+	reduction
[Ref.: #119631]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29534]	ribose ChEBI	+	carbon source
[Ref.: #29534]	salicin ChEBI	+	carbon source
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #29534]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29534]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119631]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29534]	catalase	+	1.11.1.6
[Ref.: #119631]	catalase	+	1.11.1.6
[Ref.: #119631]	oxidase	+
[Ref.: #119631]	urease	-	3.5.1.5

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119631]	11723	not determinedn.d.	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	+	+/-	-	-	+/-	+/-	+	-	-	-	+	-	-	-	+	+	-	-	+/-	-	-	-	-	-	-	+/-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16302]	Sample type/isolated from	soil sample
[Ref.: #16302]	Geographic location (country and/or sea, region)	Himalayas, Kafni glacier, 3500 m above sea level, 30° 13' 5'' N, 80° 3' 20'' E
[Ref.: #16302]	Country	India
[Ref.: #16302]	Country ISO 3 Code	IND
[Ref.: #16302]	Continent	Asia
[Ref.: #16302]	Geographic location	30.2181°/80.0556°

[Ref.: #119631]	Sample type/isolated from	Environment, Soil, Kafni glacier of Himalayas
[Ref.: #119631]	Geographic location (country and/or sea, region)	Uttaranchal
[Ref.: #119631]	Country	India
[Ref.: #119631]	Country ISO 3 Code	IND
[Ref.: #119631]	Continent	Asia
[Ref.: #119631]	Isolation date	2006
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU815294 (>99% sequence identity) for Paenibacillus glacialis from Microbeatlas

Aquatic Samples	4
Soil Samples	15
Animal Samples	9
Plant Samples	3
Total Samples	31

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16302]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119631]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16302]	Paenibacillus glacialis strain KFC91 clone 12 16S ribosomal RNA gene, partial sequence	EU815294	1499	GenBank ENA	494026 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus glacialis DSM 22343	GCA_001637205	contig	GenBank ENA	494026 tax ID	*
[Ref.: #66792]	Paenibacillus glacialis strain DSM 22343	494026.3	wgs	PATRIC	494026 tax ID	*
[Ref.: #66792]	Paenibacillus glacialis DSM 22343	2744054794	draft	JGI IMG/M	494026 tax ID	*

[Ref.: #16302]	GC-content	42.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29534]	GC-content	42 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus glacialis strain DSM 22343 PATRIC: 494026.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus glacialis strain DSM 22343 PATRIC: 494026.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	60.83	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.479	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	95.158	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	51.305	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.502	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.265	no

Availability in culture collections External links

[Ref.: #16302]

Culture collection no.

DSM 22343, NCCB 100252, KFC 91, CIP 110200

[Ref.: #80872]

SI-ID 370340

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus crassostreae sp. nov., isolated from the Pacific oyster Crassostrea gigas.	Shin SK, Kim E, Yi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002444	2017	*
Phylogeny	Paenibacillus glacialis sp. nov., isolated from the Kafni glacier of the Himalayas, India.	Kishore KH, Begum Z, Pathan AAK, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.015271-0	2009	*

References

#16302

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22343

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29534

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25931 (see below)

#37578 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80872

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370340.1 )

#119631 Collection of Institut Pasteur ; Curators of the CIP; CIP 110200

#25931

IJSEM 1909 2010 ( DOI 10.1099/ijs.0.015271-0 , PubMed 19783613 )

* These data were automatically processed and therefore are not curated

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Paenibacillus glacialis strain DSM 22343

Paenibacillus glacialis strain DSM 22343

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