Strain identifier

BacDive ID: 11648

Type strain: Yes

Species: Paenibacillus glacialis

Strain history: CIP <- 2010, S. Shivaji, CCMB, Hyderabad, India: strain KFC91

NCBI tax ID(s): 494026 (species)

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General

@ref: 16302

BacDive-ID: 11648

DSM-Number: 22343

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, motile, rod-shaped

description: Paenibacillus glacialis DSM 22343 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil sample.

NCBI tax id

  • NCBI tax id: 494026
  • Matching level: species

strain history

@refhistory
375782010, S. Shivaji, CCMB, Hyderabad, India: strain KFC91
16302<- S. Shivaji, Centre for Cellular and Molecular Biology, Hyderabad, India; KFC91 <- K. Hara Kishore
119631CIP <- 2010, S. Shivaji, CCMB, Hyderabad, India: strain KFC91

doi: 10.13145/bacdive11648.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus glacialis
  • full scientific name: Paenibacillus glacialis Kishore et al. 2010

@ref: 16302

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus glacialis

full scientific name: Paenibacillus glacialis Kishore et al. 2010

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29534positive2.2 µm0.5 µmrod-shapedyes
119631positiverod-shapedyes

pigmentation

  • @ref: 29534
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37578MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119631CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
29534positivegrowth04-30
29534positiveoptimum22
37578positivegrowth20

culture pH

@refabilitytypepH
29534positivegrowth6-7.5
29534positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29534aerobe
119631facultative anaerobe

spore formation

@refspore formationconfidence
29534yes
119631yes
69480yes95.158
69481yes100

halophily

@refsaltgrowthtested relationconcentration
29534NaClpositivegrowth0-2 %
29534NaClpositiveoptimum0-2 %

observation

  • @ref: 29534
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2953417057cellobiose+carbon source
2953417234glucose+carbon source
2953417306maltose+carbon source
2953433942ribose+carbon source
2953417814salicin+carbon source
2953417992sucrose+carbon source
2953427082trehalose+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
11963117632nitrate+reduction
11963116301nitrite-reduction

metabolite production

  • @ref: 119631
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
29534catalase+1.11.1.6
119631oxidase+
119631catalase+1.11.1.6
119631urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119631----+---------------+/-++/---+/-+/-+---+---++--+/-------+/---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
16302soil sampleHimalayas, Kafni glacier, 3500 m above sea level, 30° 13' 5'' N, 80° 3' 20'' EIndiaINDAsia30.218180.0556
119631Environment, Soil, Kafni glacier of HimalayasUttaranchalIndiaINDAsia2006

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_7059.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_113;97_120;98_3378;99_7059&stattab=map
  • Last taxonomy: Paenibacillus glacialis
  • 16S sequence: EU815294
  • Sequence Identity:
  • Total samples: 31
  • soil counts: 15
  • aquatic counts: 4
  • animal counts: 9
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
163021Risk group (German classification)
1196311Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16302
  • description: Paenibacillus glacialis strain KFC91 clone 12 16S ribosomal RNA gene, partial sequence
  • accession: EU815294
  • length: 1499
  • database: nuccore
  • NCBI tax ID: 494026

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus glacialis DSM 22343GCA_001637205contigncbi494026
66792Paenibacillus glacialis strain DSM 22343494026.3wgspatric494026
66792Paenibacillus glacialis DSM 223432744054794draftimg494026

GC content

@refGC-contentmethod
1630242.0thermal denaturation, midpoint method (Tm)
2953442

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes60.83yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.479no
69480spore-formingspore-formingAbility to form endo- or exosporesyes95.158yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes51.305no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno91.502no
69480flagellatedmotile2+Ability to perform flagellated movementyes84.265no

External links

@ref: 16302

culture collection no.: DSM 22343, NCCB 100252, KFC 91, CIP 110200

straininfo link

  • @ref: 80872
  • straininfo: 370340

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19783613Paenibacillus glacialis sp. nov., isolated from the Kafni glacier of the Himalayas, India.Kishore KH, Begum Z, Pathan AAK, Shivaji SInt J Syst Evol Microbiol10.1099/ijs.0.015271-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Ice Cover/*microbiology, India, Molecular Sequence Data, Paenibacillus/*classification/genetics/*isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny29068277Paenibacillus crassostreae sp. nov., isolated from the Pacific oyster Crassostrea gigas.Shin SK, Kim E, Yi HInt J Syst Evol Microbiol10.1099/ijsem.0.0024442017Animals, Bacterial Typing Techniques, Base Composition, Crassostrea/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16302Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22343)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22343
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29534Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2593128776041
37578Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8033
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80872Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370340.1StrainInfo: A central database for resolving microbial strain identifiers
119631Curators of the CIPCollection of Institut Pasteur (CIP 110200)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110200