Name: Paenibacillus hunanensis FeL05
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11647

Type strain:

Species: Paenibacillus hunanensis

Strain Designation: FeL05

Culture col. no.: DSM 22170, ACCC 10718, CGMCC 1.8907, CIP 110610

Strain history: CIP <- 2013, DSMZ <- Y. Liu, College of Life Sciences, Beijing, China: strain FeL05

NCBI tax ID(s): 539262 (species)

SI-ID 405905

DSM 22170, CIP 110610

Special Collections

Section

Paenibacillus hunanensis FeL05 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from seeds of hybrid rice Oryza sativa .

Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus hunanensis**
	Full Scientific Name (LPSN)	Paenibacillus hunanensis Liu et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29392]	Gram stain	positive
[Ref.: #119989]	Gram stain	positive

[Ref.: #29392]	Cell length	2.55 µm

[Ref.: #29392]	Cell width	0.85 µm

[Ref.: #29392]	Cell shape	rod-shaped
[Ref.: #119989]	Cell shape	rod-shaped

[Ref.: #29392]	Motility	yes
[Ref.: #119989]	Motility	yes

[Ref.: #29392]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16131]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #16131]

Culture medium growth

[Ref.: #16131]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16131]

Culture medium composition

expand / minimize

[Ref.: #119989]

Culture medium

CIP Medium 29

[Ref.: #119989]

Culture medium growth

[Ref.: #119989]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16131]	growth	28 °C
[Ref.: #29392]	growth	30-44 °C
[Ref.: #29392]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #29392]			optimum	7.5
[Ref.: #29392]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29392]

Oxygen tolerance

aerobe

[Ref.: #29392]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29392]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29392]	arabinose ChEBI	+	carbon source
[Ref.: #29392]	cellobiose ChEBI	+	carbon source
[Ref.: #29392]	dextrin ChEBI	+	carbon source
[Ref.: #29392]	esculin ChEBI	+	hydrolysis
[Ref.: #29392]	fructose ChEBI	+	carbon source
[Ref.: #29392]	galactose ChEBI	+	carbon source
[Ref.: #29392]	gluconate ChEBI	+	carbon source
[Ref.: #29392]	glucose ChEBI	+	carbon source
[Ref.: #29392]	glycerol ChEBI	+	carbon source
[Ref.: #29392]	glycogen ChEBI	+	carbon source
[Ref.: #29392]	inosine ChEBI	+	carbon source
[Ref.: #29392]	lactose ChEBI	+	carbon source
[Ref.: #29392]	maltose ChEBI	+	carbon source
[Ref.: #29392]	mannitol ChEBI	+	carbon source
[Ref.: #29392]	mannose ChEBI	+	carbon source
[Ref.: #29392]	melibiose ChEBI	+	carbon source
[Ref.: #29392]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29392]	nitrate ChEBI	+	reduction
[Ref.: #29392]	pyruvate ChEBI	+	carbon source
[Ref.: #29392]	raffinose ChEBI	+	carbon source
[Ref.: #29392]	ribose ChEBI	+	carbon source
[Ref.: #29392]	salicin ChEBI	+	carbon source
[Ref.: #29392]	sorbitol ChEBI	+	carbon source
[Ref.: #29392]	sucrose ChEBI	+	carbon source
[Ref.: #29392]	thymidine ChEBI	+	carbon source
[Ref.: #29392]	trehalose ChEBI	+	carbon source
[Ref.: #29392]	uridine ChEBI	+	carbon source
[Ref.: #29392]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29392]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29392]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29392]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16131]	Sample type/isolated from	seeds of hybrid rice Oryza sativa ( L.)
[Ref.: #16131]	Host species	Oryza sativa
[Ref.: #16131]	Geographic location (country and/or sea, region)	Hunan Province
[Ref.: #16131]	Country	China
[Ref.: #16131]	Country ISO 3 Code	CHN
[Ref.: #16131]	Continent	Asia

[Ref.: #119989]	Sample type/isolated from	Seeds of hybrid rice, Oryza sativa
[Ref.: #119989]	Geographic location (country and/or sea, region)	Hunan Province, China
[Ref.: #119989]	Country	China
[Ref.: #119989]	Country ISO 3 Code	CHN
[Ref.: #119989]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU741036 (>99% sequence identity) for Paenibacillus hunanensis from Microbeatlas

Aquatic Samples	27
Soil Samples	27
Animal Samples	112
Plant Samples	352
Total Samples	518

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16131]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119989]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16131]	Paenibacillus hunanensis strain FeL05 16S ribosomal RNA gene, partial sequence	EU741036	1514	GenBank ENA	539262 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus hunanensis CGMCC 1.8907	GCA_014645615	scaffold	GenBank ENA	539262 tax ID	*
[Ref.: #66792]	Paenibacillus hunanensis strain CGMCC 1.8907	539262.4	wgs	PATRIC	539262 tax ID	*
[Ref.: #66792]	Paenibacillus hunanensis DSM 22170	2901357172	draft	JGI IMG/M	539262 tax ID	*

[Ref.: #16131]	GC-content	53.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29392]	GC-content	53.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus hunanensis CGMCC 1.8907 NCBI: GCA_014645615.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus hunanensis CGMCC 1.8907 NCBI: GCA_014645615.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	66.489	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.669	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	57.667	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	83.294	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.901	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	83.885	no

Availability in culture collections External links

[Ref.: #16131]

Culture collection no.

DSM 22170, ACCC 10718, CGMCC 1.8907, CIP 110610

[Ref.: #80871]

SI-ID 405905

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus bovis sp. nov., isolated from raw yak (Bos grunniens) milk.	Gao C, Han J, Liu Z, Xu X, Hang F, Wu Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000900	2016	*
Phylogeny	Paenibacillus wenxiniae sp. nov., a nifH gene -harbouring endophytic bacterium isolated from maize.	Gao JL, Lv FY, Wang XM, Qiu TL, Yuan M, Li JW, Zhou Y, Sun JG	Antonie Van Leeuwenhoek	10.1007/s10482-015-0554-8	2015	*
Phylogeny	Paenibacillus gelatinilyticus sp. nov. a psychrotolerant bacterium isolated from a reclaimed soil and amended description of Paenibacillus shenyangensis.	Padakandla SR, Lee GW, Chae JC	Antonie Van Leeuwenhoek	10.1007/s10482-015-0574-4	2015	*
Phylogeny	Paenibacillus kyungheensis sp. nov., isolated from flowers of magnolia.	Siddiqi MZ, Siddiqi MH, Im WT, Kim YJ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000521	2015	*
Phylogeny	Paenibacillus wulumuqiensis sp. nov. and Paenibacillus dauci sp. nov., two novel species of the genus Paenibacillus.	Zhu J, Wang W, Li SH, Song SQ, Xie YQ, Tang QY, Osman G, Shi YH, Zhang ZD, Li WJ	Arch Microbiol	10.1007/s00203-014-1077-9	2015	*
Phylogeny	Paenibacillus nicotianae sp. nov., isolated from a tobacco sample.	Li QQ, Zhou XK, Dang LZ, Cheng J, Hozzein WN, Liu MJ, Hu Q, Li WJ, Duan YQ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0289-y	2014	*
Phylogeny	Paenibacillus hordei sp. nov., isolated from naked barley in Korea.	Kim JM, Lee SH, Lee SH, Choi EJ, Jeon CO	Antonie Van Leeuwenhoek	10.1007/s10482-012-9775-2	2012	*
Phylogeny	Paenibacillus hunanensis sp. nov., isolated from rice seeds.	Liu Y, Liu L, Qiu F, Schumann P, Shi Y, Zou Y, Zhang X, Song W	Int J Syst Evol Microbiol	10.1099/ijs.0.012179-0	2009	*

References

#16131

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22170

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29392

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25799 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80871

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405905.1 )

#119989 Collection of Institut Pasteur ; Curators of the CIP; CIP 110610

#25799

IJSEM 1266 2010 ( DOI 10.1099/ijs.0.012179-0 , PubMed 19667385 )

* These data were automatically processed and therefore are not curated

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Paenibacillus hunanensis CGMCC 1.8907

Paenibacillus hunanensis CGMCC 1.8907

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