Strain identifier
BacDive ID: 11647
Type strain: 
Species: Paenibacillus hunanensis
Strain Designation: FeL05
Strain history: CIP <- 2013, DSMZ <- Y. Liu, College of Life Sciences, Beijing, China: strain FeL05
NCBI tax ID(s): 539262 (species)
version 9.3 (current version)
General
@ref: 16131
BacDive-ID: 11647
DSM-Number: 22170
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Paenibacillus hunanensis FeL05 is an aerobe, spore-forming, mesophilic bacterium that was isolated from seeds of hybrid rice Oryza sativa .
NCBI tax id
- NCBI tax id: 539262
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16131 | <- Y. Liu, College of Life Sci., Capital Normal Univ., Beijing , PR China; FeL05 <- L. Liu |
| 119989 | CIP <- 2013, DSMZ <- Y. Liu, College of Life Sciences, Beijing, China: strain FeL05 |
doi: 10.13145/bacdive11647.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus hunanensis
- full scientific name: Paenibacillus hunanensis Liu et al. 2010
@ref: 16131
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus hunanensis
full scientific name: Paenibacillus hunanensis Liu et al. 2010
strain designation: FeL05
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 29392 | positive | 2.55 µm | 0.85 µm | rod-shaped | yes |
| 119989 | positive | rod-shaped | yes |
pigmentation
- @ref: 29392
- production: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16131 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 0.01 g/l Distilled water |
| 119989 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 16131 | positive | growth | 28 |
| 29392 | positive | growth | 30-44 |
| 29392 | positive | optimum | 30 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29392 | positive | growth | 05-10 | alkaliphile |
| 29392 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 29392 | aerobe | |
| 125439 | obligate aerobe | 99.2 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29392 | yes | |
| 125439 | yes | 93.2 |
halophily
- @ref: 29392
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-5 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29392 | 22599 | arabinose | + | carbon source |
| 29392 | 17057 | cellobiose | + | carbon source |
| 29392 | 23652 | dextrin | + | carbon source |
| 29392 | 28757 | fructose | + | carbon source |
| 29392 | 28260 | galactose | + | carbon source |
| 29392 | 24265 | gluconate | + | carbon source |
| 29392 | 17234 | glucose | + | carbon source |
| 29392 | 17754 | glycerol | + | carbon source |
| 29392 | 28087 | glycogen | + | carbon source |
| 29392 | 17596 | inosine | + | carbon source |
| 29392 | 17716 | lactose | + | carbon source |
| 29392 | 17306 | maltose | + | carbon source |
| 29392 | 29864 | mannitol | + | carbon source |
| 29392 | 37684 | mannose | + | carbon source |
| 29392 | 28053 | melibiose | + | carbon source |
| 29392 | 506227 | N-acetylglucosamine | + | carbon source |
| 29392 | 15361 | pyruvate | + | carbon source |
| 29392 | 16634 | raffinose | + | carbon source |
| 29392 | 33942 | ribose | + | carbon source |
| 29392 | 17814 | salicin | + | carbon source |
| 29392 | 30911 | sorbitol | + | carbon source |
| 29392 | 17992 | sucrose | + | carbon source |
| 29392 | 17748 | thymidine | + | carbon source |
| 29392 | 27082 | trehalose | + | carbon source |
| 29392 | 16704 | uridine | + | carbon source |
| 29392 | 18222 | xylose | + | carbon source |
| 29392 | 4853 | esculin | + | hydrolysis |
| 29392 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 29392
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 29392
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
- @ref: 29392
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 16131 | seeds of hybrid rice Oryza sativa ( L.) | Oryza sativa | Hunan Province | China | CHN | Asia |
| 119989 | Seeds of hybrid rice, Oryza sativa | Hunan Province, China | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Fruit (Seed) |
taxonmaps
- @ref: 69479
- File name: preview.99_10004.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_2714;97_5927;98_7428;99_10004&stattab=map
- Last taxonomy: Paenibacillus hunanensis
- 16S sequence: EU741036
- Sequence Identity:
- Total samples: 518
- soil counts: 27
- aquatic counts: 27
- animal counts: 112
- plant counts: 352
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 16131 | 1 | Risk group (German classification) |
| 119989 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 16131
- description: Paenibacillus hunanensis strain FeL05 16S ribosomal RNA gene, partial sequence
- accession: EU741036
- length: 1514
- database: nuccore
- NCBI tax ID: 539262
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus hunanensis CGMCC 1.8907 | GCA_014645615 | scaffold | ncbi | 539262 |
| 66792 | Paenibacillus hunanensis strain CGMCC 1.8907 | 539262.4 | wgs | patric | 539262 |
| 66792 | Paenibacillus hunanensis DSM 22170 | 2901357172 | draft | img | 539262 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 16131 | 53.3 | thermal denaturation, midpoint method (Tm) |
| 29392 | 53.3 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 66.489 | yes |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.669 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 57.667 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 83.294 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.901 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 83.885 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 93.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 86.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 80.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.2 |
External links
@ref: 16131
culture collection no.: DSM 22170, ACCC 10718, CGMCC 1.8907, CIP 110610
straininfo link
- @ref: 80871
- straininfo: 405905
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19667385 | Paenibacillus hunanensis sp. nov., isolated from rice seeds. | Liu Y, Liu L, Qiu F, Schumann P, Shi Y, Zou Y, Zhang X, Song W | Int J Syst Evol Microbiol | 10.1099/ijs.0.012179-0 | 2009 | Base Composition, Benzoquinones/metabolism, China, DNA Primers, Molecular Sequence Data, Oryza/*microbiology, Paenibacillus/classification/genetics/*isolation & purification/metabolism, Peptidoglycan/chemistry/isolation & purification/metabolism, Phenotype, Phylogeny, Polymerase Chain Reaction, RNA, Bacterial/chemistry/genetics, RNA, Ribosomal, 16S/chemistry/genetics, Seeds/*microbiology | Metabolism |
| Phylogeny | 22806133 | Paenibacillus hordei sp. nov., isolated from naked barley in Korea. | Kim JM, Lee SH, Lee SH, Choi EJ, Jeon CO | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9775-2 | 2012 | Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/physiology, Hordeum/*microbiology, Hydrogen-Ion Concentration, Locomotion, Microscopy, Electron, Molecular Sequence Data, Oxidoreductases/metabolism, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Temperature | Metabolism |
| Phylogeny | 25239270 | Paenibacillus nicotianae sp. nov., isolated from a tobacco sample. | Li QQ, Zhou XK, Dang LZ, Cheng J, Hozzein WN, Liu MJ, Hu Q, Li WJ, Duan YQ | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0289-y | 2014 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Tobacco/*microbiology | Genetics |
| Phylogeny | 25596844 | Paenibacillus wulumuqiensis sp. nov. and Paenibacillus dauci sp. nov., two novel species of the genus Paenibacillus. | Zhu J, Wang W, Li SH, Song SQ, Xie YQ, Tang QY, Osman G, Shi YH, Zhang ZD, Li WJ | Arch Microbiol | 10.1007/s00203-014-1077-9 | 2015 | Base Composition, Cell Wall/chemistry, China, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Genome, Bacterial/genetics, Glycolipids/analysis, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity | Genetics |
| Phylogeny | 26268929 | Paenibacillus kyungheensis sp. nov., isolated from flowers of magnolia. | Siddiqi MZ, Siddiqi MH, Im WT, Kim YJ, Yang DC | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000521 | 2015 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Flowers/*microbiology, Magnolia/*microbiology, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/chemistry, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 26319400 | Paenibacillus gelatinilyticus sp. nov. a psychrotolerant bacterium isolated from a reclaimed soil and amended description of Paenibacillus shenyangensis. | Padakandla SR, Lee GW, Chae JC | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0574-4 | 2015 | Fatty Acids/chemistry, Lipids/chemistry, Paenibacillus/chemistry/*classification/genetics/isolation & purification, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Phenotype |
| Phylogeny | 26346477 | Paenibacillus wenxiniae sp. nov., a nifH gene -harbouring endophytic bacterium isolated from maize. | Gao JL, Lv FY, Wang XM, Qiu TL, Yuan M, Li JW, Zhou Y, Sun JG | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0554-8 | 2015 | Bacterial Proteins/*genetics, Base Composition, DNA Barcoding, Taxonomic, DNA, Bacterial, Endophytes/chemistry/classification/*genetics, Oxidoreductases/*genetics, Paenibacillus/chemistry/classification/*genetics, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Zea mays/*microbiology | Phenotype |
| Phylogeny | 26769366 | Paenibacillus bovis sp. nov., isolated from raw yak (Bos grunniens) milk. | Gao C, Han J, Liu Z, Xu X, Hang F, Wu Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000900 | 2016 |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16131 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22170) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22170 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29392 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25799 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 80871 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405905.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 119989 | Curators of the CIP | Collection of Institut Pasteur (CIP 110610) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110610 | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |