Name: Paenibacillus alkaliterrae KSL-134
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11584

Type strain:

Species: Paenibacillus alkaliterrae

Strain Designation: KSL-134

Culture col. no.: DSM 17040, CIP 109150, KCTC 3956

Strain history: CIP <- 2006, DSMZ <- J.-H. Yoon, KSL-134

NCBI tax ID(s): 320909 (species)

SI-ID 281459

DSM 17040, KCTC 3956, CIP 109150

Special Collections

Section

Paenibacillus alkaliterrae KSL-134 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus alkaliterrae**
	Full Scientific Name (LPSN)	Paenibacillus alkaliterrae Yoon et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31540]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #116250]	Gram stain	positive

[Ref.: #31540]	Cell length	2.25 µm

[Ref.: #31540]	Cell width	0.45 µm

[Ref.: #31540]	Cell shape	rod-shaped
[Ref.: #116250]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31540]	Motility	yes
[Ref.: #116250]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #67771]	Flagellum arrangement	monotrichous, polar

[Ref.: #31540]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6701]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6701]

Culture medium growth

[Ref.: #6701]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6701]

Culture medium composition

expand / minimize

[Ref.: #116250]

Culture medium

CIP Medium 72

[Ref.: #116250]

Culture medium growth

[Ref.: #116250]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6701]	growth	30 °C
[Ref.: #31540]	growth	10-37 °C
[Ref.: #31540]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31540]			optimum	7.5
[Ref.: #31540]			growth	7.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31540]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31540]	Ability of spore formation	yes
[Ref.: #116250]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %95.847

[Ref.: #31540]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31540]	arabinose ChEBI	+	carbon source
[Ref.: #31540]	cellobiose ChEBI	+	carbon source
[Ref.: #31540]	esculin ChEBI	+	hydrolysis
[Ref.: #31540]	fructose ChEBI	+	carbon source
[Ref.: #31540]	galactose ChEBI	+	carbon source
[Ref.: #31540]	glucose ChEBI	+	carbon source
[Ref.: #31540]	maltose ChEBI	+	carbon source
[Ref.: #31540]	mannose ChEBI	+	carbon source
[Ref.: #31540]	salicin ChEBI	+	carbon source
[Ref.: #31540]	sucrose ChEBI	+	carbon source
[Ref.: #31540]	trehalose ChEBI	+	carbon source
[Ref.: #31540]	tween 80 ChEBI	+	carbon source
[Ref.: #31540]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31540]	alpha-galactosidase	+	3.2.1.22
[Ref.: #31540]	catalase	+	1.11.1.6
[Ref.: #31540]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6701]	Sample type/isolated from	soil
[Ref.: #6701]	Geographic location (country and/or sea, region)	Kwangchun
[Ref.: #6701]	Country	Republic of Korea
[Ref.: #6701]	Country ISO 3 Code	KOR
[Ref.: #6701]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From an alkaline soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Kwangchun
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #116250]	Sample type/isolated from	Environment, Soil, alkaline
[Ref.: #116250]	Geographic location (country and/or sea, region)	Kwangchun
[Ref.: #116250]	Country	Republic of Korea
[Ref.: #116250]	Country ISO 3 Code	KOR
[Ref.: #116250]	Continent	Asia
[Ref.: #116250]	Isolation date	2003
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6701]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116250]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6701]	Paenibacillus alkaliterrae strain KSL-134 16S ribosomal RNA gene, partial sequence	AY960748	1509	GenBank ENA	320909 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus alkaliterrae DSM 17040	GCA_021532375	contig	GenBank ENA	320909 tax ID	*

[Ref.: #6701]	GC-content	49.4 mol%
[Ref.: #67771]	GC-content	49.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus alkaliterrae DSM 17040 NCBI: GCA_021532375.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	66.712	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.497	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.233	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	95.847	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.711	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	83.916	yes

Availability in culture collections External links

[Ref.: #6701]

Culture collection no.

DSM 17040, CIP 109150, KCTC 3956

[Ref.: #80812]

SI-ID 281459

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus sputi sp. nov., isolated from the sputum of a patient with pulmonary disease.	Kim KK, Lee KC, Yu H, Ryoo S, Park Y, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.017137-0	2009	*
Phylogeny	Paenibacillus harenae sp. nov., isolated from desert sand in China.	Jeon CO, Lim JM, Lee SS, Chung BS, Park DJ, Xu LH, Jiang CL, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65664-0	2009	*
Phylogeny	Paenibacillus alkaliterrae sp. nov., isolated from an alkaline soil in Korea.	Yoon JH, Kang SJ, Yeo SH, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63771-0	2005	*
Phylogeny	Paenibacillus vietnamensis sp. nov., isolated from the rhizosphere soil of Arachis hypogaea.	Nguyen MH, Dinh MTN, Lee KC, Kim JS, Nguyen TKN, Lee JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.005537	2022	*
Phylogeny	Paenibacillus arenilitoris sp. nov., isolated from seashore sand and genome mining revealed the biosynthesis potential as antibiotic producer.	Deng N, Huang H, Hu Y, Wang X, Mo K	Antonie Van Leeuwenhoek	10.1007/s10482-022-01773-1	2022	*

References

#6701

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17040

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31540

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27832 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80812

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID281459.1 )

#116250 Collection of Institut Pasteur ; Curators of the CIP; CIP 109150

#27832

IJSEM 2339 2005 ( DOI 10.1099/ijs.0.63771-0 , PubMed 16280493 )

* These data were automatically processed and therefore are not curated

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Paenibacillus alkaliterrae DSM 17040

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