Strain identifier

BacDive ID: 11584

Type strain: Yes

Species: Paenibacillus alkaliterrae

Strain Designation: KSL-134

Strain history: CIP <- 2006, DSMZ <- J.-H. Yoon, KSL-134

NCBI tax ID(s): 320909 (species)

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General

@ref: 6701

BacDive-ID: 11584

DSM-Number: 17040

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, motile, rod-shaped

description: Paenibacillus alkaliterrae KSL-134 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 320909
  • Matching level: species

strain history

@refhistory
6701<- J.-H. Yoon, KSL-134
67771<- JH Yoon, KRIBB
116250CIP <- 2006, DSMZ <- J.-H. Yoon, KSL-134

doi: 10.13145/bacdive11584.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus alkaliterrae
  • full scientific name: Paenibacillus alkaliterrae Yoon et al. 2005

@ref: 6701

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus alkaliterrae

full scientific name: Paenibacillus alkaliterrae Yoon et al. 2005

strain designation: KSL-134

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
31540positive2.25 µm0.45 µmrod-shapedyes
67771rod-shapedyesmonotrichous, polar
67771positive
116250positiverod-shapedyes

pigmentation

  • @ref: 31540
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6701CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
116250CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
6701positivegrowth30
31540positivegrowth10-37
31540positiveoptimum30
67771positivegrowth30

culture pH

@refabilitytypepHPH range
31540positivegrowth7.0-9.5alkaliphile
31540positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31540aerobe
67771aerobe

spore formation

@refspore formationconfidence
31540yes
116250yes
69480yes95.847

observation

@refobservation
31540aggregates in clumps
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3154022599arabinose+carbon source
3154017057cellobiose+carbon source
3154028757fructose+carbon source
3154028260galactose+carbon source
3154017234glucose+carbon source
3154017306maltose+carbon source
3154037684mannose+carbon source
3154017814salicin+carbon source
3154017992sucrose+carbon source
3154027082trehalose+carbon source
3154053426tween 80+carbon source
3154018222xylose+carbon source
315404853esculin+hydrolysis

enzymes

@refvalueactivityec
31540alpha-galactosidase+3.2.1.22
31540catalase+1.11.1.6
31540cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
6701soilKwangchunRepublic of KoreaKORAsia
67771From an alkaline soilKwangchunRepublic of KoreaKORAsia
116250Environment, Soil, alkalineKwangchunRepublic of KoreaKORAsia2003

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
67011Risk group (German classification)
1162501Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6701
  • description: Paenibacillus alkaliterrae strain KSL-134 16S ribosomal RNA gene, partial sequence
  • accession: AY960748
  • length: 1509
  • database: nuccore
  • NCBI tax ID: 320909

Genome sequences

  • @ref: 66792
  • description: Paenibacillus alkaliterrae DSM 17040
  • accession: GCA_021532375
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 320909

GC content

@refGC-contentmethod
670149.4
6777149.4high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes66.712yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.497yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes77.233yes
69480spore-formingspore-formingAbility to form endo- or exosporesyes95.847yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno88.711no
69480flagellatedmotile2+Ability to perform flagellated movementyes83.916yes

External links

@ref: 6701

culture collection no.: DSM 17040, CIP 109150, KCTC 3956

straininfo link

  • @ref: 80812
  • straininfo: 281459

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16280493Paenibacillus alkaliterrae sp. nov., isolated from an alkaline soil in Korea.Yoon JH, Kang SJ, Yeo SH, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.63771-02005DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis/metabolism, Gram-Positive Endospore-Forming Rods/classification/*isolation & purification/metabolism, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, RNA, Ribosomal, 16S/*analysis, Sequence Analysis, DNA, *Soil Microbiology, Species SpecificityMetabolism
Phylogeny19126715Paenibacillus harenae sp. nov., isolated from desert sand in China.Jeon CO, Lim JM, Lee SS, Chung BS, Park DJ, Xu LH, Jiang CL, Kim CJInt J Syst Evol Microbiol10.1099/ijs.0.65664-02009Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Desert Climate, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Rods/*classification/genetics/*isolation & purification/physiology, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Silicon Dioxide, *Soil Microbiology, Species SpecificityPhenotype
Phylogeny19946060Paenibacillus sputi sp. nov., isolated from the sputum of a patient with pulmonary disease.Kim KK, Lee KC, Yu H, Ryoo S, Park Y, Lee JSInt J Syst Evol Microbiol10.1099/ijs.0.017137-02009Aerobiosis, Anaerobiosis, Bacterial Typing Techniques, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Gram-Positive Bacterial Infections/*microbiology, Humans, Lung Diseases/*microbiology, Molecular Sequence Data, Paenibacillus/*classification/*isolation & purification, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial/cytology, Sputum/*microbiologyPathogenicity
Phylogeny36018400Paenibacillus arenilitoris sp. nov., isolated from seashore sand and genome mining revealed the biosynthesis potential as antibiotic producer.Deng N, Huang H, Hu Y, Wang X, Mo KAntonie Van Leeuwenhoek10.1007/s10482-022-01773-12022RNA, Ribosomal, 16S/genetics, Phylogeny, *Sand, Phosphatidylethanolamines, Diaminopimelic Acid/chemistry, Peptidoglycan/chemistry, Sodium Chloride/metabolism, Anti-Bacterial Agents, Cardiolipins, DNA, Bacterial/genetics/chemistry, Bacterial Typing Techniques, Sequence Analysis, DNA, *Paenibacillus, Phospholipids/analysis, Fatty Acids/analysis, Nucleotides, Terpenes, QuinonesTranscriptome
Phylogeny36256451Paenibacillus vietnamensis sp. nov., isolated from the rhizosphere soil of Arachis hypogaea.Nguyen MH, Dinh MTN, Lee KC, Kim JS, Nguyen TKN, Lee JSInt J Syst Evol Microbiol10.1099/ijsem.0.0055372022Rhizosphere, RNA, Ribosomal, 16S/genetics, Arachis, Phylogeny, Diaminopimelic Acid/chemistry, Peptidoglycan/chemistry, Soil, Sodium Chloride, Soil Microbiology, Base Composition, *DNA, Bacterial/genetics, Bacterial Typing Techniques, Sequence Analysis, DNA, Fatty Acids/chemistry, *Paenibacillus, Quinones, TerpenesTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6701Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17040)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17040
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31540Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2783228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
80812Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID281459.1StrainInfo: A central database for resolving microbial strain identifiers
116250Curators of the CIPCollection of Institut Pasteur (CIP 109150)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109150