Paenibacillus lautus 160 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from intestinal tract of child.
Gram-positive motile rod-shaped aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Paenibacillaceae |
| Genus Paenibacillus |
| Species Paenibacillus lautus |
| Full scientific name Paenibacillus lautus (Nakamura 1984 ex Batchelor 1919) Heyndrickx et al. 1996 |
| Synonyms (1) |
| BacDive ID | Other strains from Paenibacillus lautus (6) | Type strain |
|---|---|---|
| 11470 | P. lautus DSM 13411, HSCC 426, NRRL NRS-678 | |
| 11471 | P. lautus DSM 13413, NRRL NRS-1171 | |
| 152791 | P. lautus CCUG 47619 B | |
| 153219 | P. lautus CCUG 48784 | |
| 155536 | P. lautus CCUG 58032 | |
| 169164 | P. lautus Turin12B-W40, DSM 113943 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 40530 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 1277 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 120573 | CIP Medium 3 | Medium recipe at CIP | |||
| 120573 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | + | builds acid from | from API 50CH acid |
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68368 | 17634 ChEBI | D-glucose | - | fermentation | from API 20E |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68368 | 16899 ChEBI | D-mannitol | - | fermentation | from API 20E |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | + | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | + | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68368 | 30849 ChEBI | L-arabinose | - | fermentation | from API 20E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68368 | 62345 ChEBI | L-rhamnose | - | fermentation | from API 20E |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | + | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68368 | 28053 ChEBI | melibiose | - | fermentation | from API 20E |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | + | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | + | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 120573 | 17632 ChEBI | nitrate | + | reduction | |
| 120573 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | + | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68371 | 28017 ChEBI | starch | + | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 120573 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 120573 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 120573 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48770 | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48770 | - | + | - | + | + | + | + | - | - | + | + | + | + | + | - | - | - | - | + | - | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | - | + | + | - | - | - | + | - | - | - | - | - | |
| 120573 | not determinedn.d. | + | - | +/- | + | + | + | - | - | + | + | + | + | + | - | +/- | - | - | + | - | +/- | + | + | + | + | + | + | + | + | + | + | + | + | - | + | + | + | + | - | + | + | - | - | - | +/- | - | - | +/- | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM400094v1 assembly for Paenibacillus lautus NBRC 15380 | contig | 1349780 | 67.94 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Paenibacillus lautus DNA for 16S ribosomal RNA | D78472 | 1436 | 1401 | ||
| 20218 | Paenibacillus lautus gene for 16S rRNA, partial sequence | AB073188 | 1505 | 1401 | ||
| 20218 | Paenibacillus lautus partial 16S rRNA gene, strain JCM 9073, isolate AB236d | FR775438 | 1437 | 1401 | ||
| 20218 | Paenibacillus lautus gene for 16S rRNA, partial sequence, strain: NBRC 15380 | AB363733 | 1480 | 1401 | ||
| 20218 | B.lautus 16S ribosomal RNA | X60621 | 1430 | 85381 | ||
| 20218 | Paenibacillus lautus DNA for 16S rRNA | D78473 | 1436 | 1401 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 97.30 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 92.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 84.20 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 88.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 60.37 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 94.86 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 92.47 | no |
| 125438 | aerobic | aerobicⓘ | yes | 61.13 | no |
| 125438 | thermophilic | thermophileⓘ | no | 93.30 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 85.94 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Novel gut bacteria species Paenibacillus ilasis with phosphorus degrading and soluble starch hydrolysis abilities isolated from fresh feces of rhinoceros. | Li X, Zuo S, Li M, Li Q, Su L. | Sci Rep | 10.1038/s41598-025-06760-w | 2025 | ||
| Characterization of Novel Pullulanase Type I from Newly Isolated Bacillus cereus Strain NP9: Potential Additive for Laundry Detergent Formulations. | Arabaci N. | Appl Biochem Biotechnol | 10.1007/s12010-025-05286-1 | 2025 | ||
| Paenibacillus larvae-Directed Bacteriophage HB10c2 and Its Application in American Foulbrood-Affected Honey Bee Larvae. | Beims H, Wittmann J, Bunk B, Sproer C, Rohde C, Gunther G, Rohde M, von der Ohe W, Steinert M. | Appl Environ Microbiol | 10.1128/aem.00804-15 | 2015 | ||
| Metabolism | Antibiotic resistance is prevalent in an isolated cave microbiome. | Bhullar K, Waglechner N, Pawlowski A, Koteva K, Banks ED, Johnston MD, Barton HA, Wright GD. | PLoS One | 10.1371/journal.pone.0034953 | 2012 | |
| A diverse intrinsic antibiotic resistome from a cave bacterium. | Pawlowski AC, Wang W, Koteva K, Barton HA, McArthur AG, Wright GD. | Nat Commun | 10.1038/ncomms13803 | 2016 | ||
| Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park. | Mead DA, Lucas S, Copeland A, Lapidus A, Cheng JF, Bruce DC, Goodwin LA, Pitluck S, Chertkov O, Zhang X, Detter JC, Han CS, Tapia R, Land M, Hauser LJ, Chang YJ, Kyrpides NC, Ivanova NN, Ovchinnikova G, Woyke T, Brumm C, Hochstein R, Schoenfeld T, Brumm P. | Stand Genomic Sci | 10.4056/sigs.2605792 | 2012 | ||
| Metabolism | Microbial Diversity in Decaying Oil Palm Empty Fruit Bunches (OPEFB) and Isolation of Lignin-degrading Bacteria from a Tropical Environment. | Tahir AA, Mohd Barnoh NF, Yusof N, Mohd Said NN, Utsumi M, Yen AM, Hashim H, Mohd Noor MJM, Akhir FNM, Mohamad SE, Sugiura N, Othman N, Zakaria Z, Hara H. | Microbes Environ | 10.1264/jsme2.me18117 | 2019 | |
| Phylogenetically diverse bacteria isolated from tattoo inks, an azo dye-rich environment, decolorize a wide range of azo dyes. | Nho SW, Cui X, Kweon O, Jin J, Chen H, Moon MS, Kim SJ, Cerniglia CE. | Ann Microbiol | 10.1186/s13213-021-01648-2 | 2021 | ||
| Phylogeny | Isolation and characterization of endophytic bacteria isolated from the leaves of the common bean (Phaseolus vulgaris). | de Oliveira Costa LE, de Queiroz MV, Borges AC, de Moraes CA, de Araujo EF. | Braz J Microbiol | 10.1590/s1517-838220120004000041 | 2012 | |
| Suppressive potential of Paenibacillus strains isolated from the tomato phyllosphere against fusarium crown and root rot of tomato. | Sato I, Yoshida S, Iwamoto Y, Aino M, Hyakumachi M, Shimizu M, Takahashi H, Ando S, Tsushima S. | Microbes Environ | 10.1264/jsme2.me13172 | 2014 | ||
| Characterization of a novel cysteine-less Cu/Zn-superoxide dismutase in Paenibacillus lautus missing a conserved disulfide bond. | Furukawa Y, Shintani A, Narikiyo S, Sue K, Akutsu M, Muraki N. | J Biol Chem | 10.1016/j.jbc.2023.105040 | 2023 | ||
| Phylogeny | Genetic Characterisation of the Bacterial Microbiota Associating With a Strain of Epichloë Fungal Endophyte of Perennial Ryegrass and the Interaction With Its Paenibacillus Members. | Bastias DA, Johnson LJ, Kumar S, Jauregui R, Applegate ER, Card SD. | Environ Microbiol Rep | 10.1111/1758-2229.70113 | 2025 | |
| The Impact of Anti-Inflammatory Drugs on the Prokaryotic Community Composition and Selected Bacterial Strains Based on Microcosm Experiments. | Farkas R, Mireisz T, Toumi M, Abbaszade G, Sztrada N, Toth E. | Microorganisms | 10.3390/microorganisms11061447 | 2023 | ||
| Phylogeny | Genome analysis suggests the bacterial family Acetobacteraceae is a source of undiscovered specialized metabolites. | Guzman J, Vilcinskas A. | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01676-7 | 2022 | |
| Paenibacillus sp. Strain UY79, Isolated from a Root Nodule of Arachis villosa, Displays a Broad Spectrum of Antifungal Activity. | Costa A, Corallo B, Amarelle V, Stewart S, Pan D, Tiscornia S, Fabiano E. | Appl Environ Microbiol | 10.1128/aem.01645-21 | 2022 | ||
| The Roman Houses of the Caelian Hill (Rome, Italy): Multitemporal Evaluation of Biodeterioration Patterns. | Isola D, Bartoli F, Morretta S, Caneva G. | Microorganisms | 10.3390/microorganisms11071770 | 2023 | ||
| Phylogeny | Isolation and characterization of chitinase-producing Bacillus and Paenibacillus strains from salted and fermented shrimp, Acetes japonicus. | Han KI, Patnaik BB, Kim YH, Kwon HJ, Han YS, Han MD | J Food Sci | 10.1111/1750-3841.12387 | 2014 | |
| Phylogeny | Description of Streptomyces explomaris sp. nov., isolated from the coastal soil rhizosphere of Juniperus excelsa and reclassification of Streptomyces libani as a later heterotypic synonym of Streptomyces nigrescens. | Shu W, Ruckert-Reed C, Gromyko O, Tistechok S, Kalinowski J, Luzhetskyy A, Wittmann C. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006711 | 2025 | |
| Phylogeny | Paenibacillus solani sp. nov., isolated from potato rhizosphere soil. | Liu B, Liu GH, Sengonca C, Schumann P, Lan JL, Chen DJ, Cui WD, Lin NQ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001378 | 2016 | |
| Phylogeny | Paenibacillus zeae sp. nov., isolated from maize (Zea mays L.) seeds. | Liu Y, Zhai L, Wang R, Zhao R, Zhang X, Chen C, Cao Y, Cao Y, Xu T, Ge Y, Zhao J, Cheng C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000608 | 2015 | |
| Phylogeny | Paenibacillus qingshengii sp. nov., isolated from a lead-zinc tailing. | Chen L, Wang L, Sheng XF | Int J Syst Evol Microbiol | 10.1099/ijs.0.000232 | 2015 | |
| Phylogeny | Paenibacillus lemnae sp. nov., an endophytic bacterium of duckweed (Lemna aequinoctialis). | Kittiwongwattana C, Thawai C | Int J Syst Evol Microbiol | 10.1099/ijs.0.067876-0 | 2014 |
| #1277 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3035 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40530 | ; Curators of the CIP; |
| #48770 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27414 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #120573 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103118 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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