Name: Oxalophagus oxalicus DSM 5503
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11458

Type strain:

Species: Oxalophagus oxalicus

Culture col. no.: DSM 5503, Alt Ox1

Strain history: <- I. Dehning, Universität Tübingen, Lehrstuhl Mikrobiologie, Germany; Alt Ox1 <- I. Dehning {1988}

NCBI tax ID(s): 36848 (species)

SI-ID 47936

DSM 5503, ATCC 49686

Special Collections

DSMZ

Section

Oxalophagus oxalicus DSM 5503 is an anaerobe bacterium that was isolated from freshwater mud.

anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Oxalophagus*
	Species	**Oxalophagus oxalicus**
	Full Scientific Name (LPSN)	Oxalophagus oxalicus (Dehning and Schink 1990) Collins et al. 1994

Synonym

Clostridium oxalicum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2085]

Culture medium

OXALOPHAGUS MEDIUM (DSMZ Medium 194b)

[Ref.: #2085]

Culture medium growth

[Ref.: #2085]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #2085]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2085]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2085]	Sample type/isolated from	freshwater mud
[Ref.: #2085]	Geographic location (country and/or sea, region)	creek near Tübingen
[Ref.: #2085]	Country	Germany
[Ref.: #2085]	Country ISO 3 Code	DEU
[Ref.: #2085]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2085]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2085]	Oxalophagus oxalicus 16S rRNA gene, strain DSM 5503	Y14581	1497	GenBank ENA	36848 tax ID
[Ref.: #20218]	Oxalophagus oxalicus 16S rRNA gene, strain DSM 5503	X77840	1518	GenBank ENA	36848 tax ID	*

[Ref.: #2085]

GC-content

36.3 mol%

Availability in culture collections External links

[Ref.: #2085]

Culture collection no.

DSM 5503, Alt Ox1

[Ref.: #80695]

SI-ID 47936

References

#2085

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5503

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#80695

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47936.1 )

* These data were automatically processed and therefore are not curated

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