Strain identifier
BacDive ID: 11458
Type strain: 
Species: Oxalophagus oxalicus
Strain history: <- I. Dehning, Universität Tübingen, Lehrstuhl Mikrobiologie, Germany; Alt Ox1 <- I. Dehning {1988}
NCBI tax ID(s): 36848 (species)
General
@ref: 2085
BacDive-ID: 11458
DSM-Number: 5503
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Oxalophagus oxalicus DSM 5503 is an anaerobe, mesophilic bacterium that was isolated from freshwater mud.
NCBI tax id
- NCBI tax id: 36848
- Matching level: species
strain history
- @ref: 2085
- history: <- I. Dehning, Universität Tübingen, Lehrstuhl Mikrobiologie, Germany; Alt Ox1 <- I. Dehning {1988}
doi: 10.13145/bacdive11458.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Oxalophagus
- species: Oxalophagus oxalicus
- full scientific name: Oxalophagus oxalicus (Dehning and Schink 1990) Collins et al. 1994
synonyms
- @ref: 20215
- synonym: Clostridium oxalicum
@ref: 2085
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Oxalophagus
species: Oxalophagus oxalicus
full scientific name: Oxalophagus oxalicus (Dehning and Schink 1990) Collins et al. 1994
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2085
- name: OXALOPHAGUS MEDIUM (DSMZ Medium 194b)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium194b.pdf
culture temp
- @ref: 2085
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2085
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 2085
- sample type: freshwater mud
- geographic location: creek near Tübingen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Terrestrial | #Mud (Sludge) |
Safety information
risk assessment
- @ref: 2085
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Oxalophagus oxalicus 16S rRNA gene, strain DSM 5503 | X77840 | 1518 | ena | 36848 |
| 2085 | Oxalophagus oxalicus 16S rRNA gene, strain DSM 5503 | Y14581 | 1497 | ena | 36848 |
GC content
- @ref: 2085
- GC-content: 36.3
External links
@ref: 2085
culture collection no.: DSM 5503, Alt Ox1
straininfo link
- @ref: 80695
- straininfo: 47936
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2085 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5503) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5503 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 80695 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47936.1 | StrainInfo: A central database for resolving microbial strain identifiers |