Name: Paenibacillus alginolyticus 1347
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11459

Type strain:

Species: Paenibacillus alginolyticus

Strain Designation: 1347

Culture col. no.: DSM 5050, NRRL NRS-1347, JCM 9068, ATCC 51185, CIP 103122, IFO 15375, NBRC 15375, NCIMB 12517

Strain history: CIP <- 1988, L.K. Nakamura, NRRL <- N.R. Smith: strain NRS-1347, Bacillus circulans <- F.E. Clark

NCBI tax ID(s): 1122915 (strain), 59839 (species)

SI-ID 10613

LMG 18039, ATCC 51185, CIP 103122, DSM 5050, IFO 15375, JCM 9068, LMG 16597, LMG 18723, NCIMB 12517, NRRL NRS-1347, NCIB 12517, KCTC 3567, NBRC 15375, CFBP 4264, BCRC 15912, CCRC 15912

Other strains from Paenibacillus alginolyticus

P. alginolyticus 8, DSM 13260, HSCC 609, NRRL NRS-1350

Section

Paenibacillus alginolyticus 1347 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from soil.

motile
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus alginolyticus**
	Full Scientific Name (LPSN)	Paenibacillus alginolyticus (Nakamura 1987) Shida et al. 1997

Synonym

Bacillus alginolyticus

Information on morphological and physiological properties Morphology

[Ref.: #116229]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #116229]	Cell shape	rod-shaped

[Ref.: #116229]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.75

Information on culture and growth conditions Culture and growth conditions

[Ref.: #34117]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34117]

Culture medium growth

[Ref.: #34117]

Culture medium composition

expand / minimize

[Ref.: #1914]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1914]

Culture medium growth

[Ref.: #1914]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1914]

Culture medium composition

expand / minimize

[Ref.: #116229]

Culture medium

CIP Medium 3

[Ref.: #116229]

Culture medium growth

[Ref.: #116229]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1914]		growth	30 °C
[Ref.: #34117]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #116229]		growth	30-41 °C
[Ref.: #116229]	no	growth	10 °C
[Ref.: #116229]	no	growth	22 °C
[Ref.: #116229]	no	growth	45 °C

[Ref.: #1914]	Temperature range	mesophilic
[Ref.: #34117]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116229]	Temperature range	psychrophilic
[Ref.: #116229]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116229]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %96
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #116229]	NaCl		growth	0	%
[Ref.: #116229]	NaCl	no	growth	2	%
[Ref.: #116229]	NaCl	no	growth	4	%
[Ref.: #116229]	NaCl	no	growth	6	%
[Ref.: #116229]	NaCl	no	growth	8	%
[Ref.: #116229]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116229]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116229]	nitrate ChEBI	-	reduction
[Ref.: #116229]	nitrate ChEBI	+	respiration
[Ref.: #116229]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #116229]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #116229]	amylase	-
[Ref.: #116229]	beta-galactosidase	+	3.2.1.23
[Ref.: #116229]	caseinase	-	3.4.21.50
[Ref.: #116229]	catalase	+	1.11.1.6
[Ref.: #116229]	lecithinase	-
[Ref.: #116229]	lysine decarboxylase	-	4.1.1.18
[Ref.: #116229]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116229]	oxidase	+

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #116229]	9171	not determinedn.d.	-	-	-	-	-	+	-	-	+	+	+	+	+	-	-	-	-	+	-	-	-	-	-	+	+	-	-	+	-	+	+	+	-	-	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1914]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil

[Ref.: #116229]	Sample type/isolated from	Environment, Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D78465 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	1
Soil Samples	11
Animal Samples	1
Plant Samples
Total Samples	13

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1914]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116229]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Paenibacillus alginolyticus clone JV-1F 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478104	429	ENA	59839 tax ID	*
[Ref.: #20218]	Paenibacillus alginolyticus gene for 16S rRNA, partial sequence	AB073362	1497	ENA	59839 tax ID	*
[Ref.: #20218]	Paenibacillus aliginolyticus DNA for 16S rRNA	D78465	1424	ENA	59839 tax ID	*
[Ref.: #20218]	Paenibacillus alginolyticus gene for 16S rRNA, partial sequence, strain: NBRC 15375	AB680848	1467	ENA	59839 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus alginolyticus DSM 5050 = NBRC 15375	GCA_000422905	scaffold	GenBank	1122915 tax ID
[Ref.: #67770]	Paenibacillus alginolyticus DSM 5050 = NBRC 15375	GCA_004000725	contig	GenBank	1122915 tax ID
[Ref.: #66792]	Paenibacillus alginolyticus DSM 5050	1122915.3	wgs	PATRIC	1122915 tax ID	*
[Ref.: #66792]	Paenibacillus alginolyticus DSM 5050 = NBRC 15375	1122915.5	wgs	PATRIC	1122915 tax ID	*
[Ref.: #66792]	Paenibacillus alginolyticus DSM 5050	2524614879	draft	JGI IMG/M	1122915 tax ID	*

[Ref.: #1914]	GC-content	47.1-48.0 mol%
[Ref.: #67770]	GC-content	47-49 mol%	Buoyant density centrifugation (BD)
[Ref.: #67770]	GC-content	48 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus alginolyticus DSM 5050 = NBRC 15375 PATRIC: 1122915.5
[Ref.: #69481]	spore-forming	yes	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus alginolyticus DSM 5050 PATRIC: 1122915.3
[Ref.: #69480]	motile	yes	85.215	no
[Ref.: #69480]	flagellated	yes	82.441	no
[Ref.: #69480]	gram-positive	yes	68.616	no
[Ref.: #69480]	anaerobic	no	98.761	no
[Ref.: #69480]	aerobic	yes	87.579	no
[Ref.: #69480]	halophile	no	97.67	no
[Ref.: #69480]	spore-forming	yes	91.054	no
[Ref.: #69480]	glucose-util	yes	87.529	no
[Ref.: #69480]	thermophile	no	99.614	yes
[Ref.: #69480]	glucose-ferment	no	92.054	no

Availability in culture collections External links

[Ref.: #1914]

Culture collection no.

DSM 5050, NRRL NRS-1347, JCM 9068, ATCC 51185, CIP 103122, IFO 15375, NBRC 15375, NCIMB 12517

[Ref.: #80696]

SI-ID 10613

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus anseongense sp. nov. a Silver Nanoparticle Producing Bacterium Isolated from Rhizospheric Soil.	Huq MA	Curr Microbiol	10.1007/s00284-020-02086-0	2020	*
Phylogeny	Paenibacillus aceris sp. nov., isolated from the rhizosphere of Acer okamotoanum, a plant native to Ulleungdo Island, Republic of Korea.	Hwang YJ, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001748	2017	*
Phylogeny	Paenibacillus qinlingensis sp. nov., an indole-3-acetic acid-producing bacterium isolated from roots of Sinopodophyllum hexandrum (Royle) Ying.	Xin K, Li M, Chen C, Yang X, Li Q, Cheng J, Zhang L, Shen X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001666	2017	*
Phylogeny	Paenibacillus oryzisoli sp. nov., isolated from the rhizosphere of rice.	Zhang J, Ma XT, Gao JS, Zhang CW, Zhao JJ, Zhang RJ, Ma LA, Zhang XX	Antonie Van Leeuwenhoek	10.1007/s10482-016-0777-3	2016	*
Phylogeny	Paenibacillus alba nov., isolated from peat soil.	Kim HS, Srinivasan S, Lee SS	Curr Microbiol	10.1007/s00284-015-0795-9	2015	*
Phylogeny	Paenibacillus frigoriresistens sp. nov., a novel psychrotroph isolated from a peat bog in Heilongjiang, Northern China.	Ming H, Nie GX, Jiang HC, Yu TT, Zhou EM, Feng HG, Tang SK, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-012-9738-7	2012	*

References

#1914

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5050

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34117 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80696

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10613.1 )

#116229 Collection of Institut Pasteur ; Curators of the CIP; CIP 103122
* These data were automatically processed and therefore are not curated

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Paenibacillus alginolyticus DSM 5050 = NBRC 15375

Paenibacillus alginolyticus DSM 5050

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Change proposal