Paenibacillus alginolyticus (DSM 5050, NRRL NRS-1347, 1347)

Name: Paenibacillus alginolyticus (DSM 5050, NRRL NRS-1347, 1347)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11459

Type strain

Strain Designation 1347

Culture col. no. DSM 5050 NRRL NRS-1347 1347 JCM 9068 ATCC 51185 4 more

NCBI tax ID(s) 1122915 59839

Special Collections DSMZ JCM CIP

History <- NRRL <- N.R. Smith, 1347 (Bacillus circulans) <- F.E. Clark NRRL NRS-1347 <-- N. R. Smith NRS-1347. CIP <- 1988, L.K. Nakamura, NRRL <- N.R. Smith: strain NRS-1347, Bacillus circulans <- F.E. Clark

Links

Paenibacillus alginolyticus 1347 is a facultative anaerobe, Gram-positive, motile bacterium that was isolated from soil.

Gram-positive motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 10613

LMG 18039,ATCC 51185,CIP 103122,DSM 5050,IFO 15375,JCM 9068,LMG 16597,LMG 18723,NCIMB 12517,NRRL NRS-1347,NCIB 12517,KCTC 3567,NBRC 15375,CFBP 4264,BCRC 15912,CCRC 15912

@ref 20215

Last LPSN update 2026-02-09 11:20:33

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus alginolyticus

Full scientific name Paenibacillus alginolyticus (Nakamura 1987) Shida et al. 1997

Synonyms (1)

Bacillus alginolyticus

BacDive ID	Other strains from **Paenibacillus alginolyticus** (1)	Type strain
11460	P. alginolyticus 8, DSM 13260, HSCC 609, NRRL NRS-1350

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116229	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
34117	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
1914	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
116229	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1914	positive	growth	30
34117	positive	growth	30
67770	positive	growth	30
116229	positive	growth	30-41
116229	negative	growth	10
116229	negative	growth	22
116229	negative	growth	45

Physiology and metabolism

Oxygen tolerance

116229

Oxygen tolerancefacultative anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116229	NaCl	positive	growth	0 %
116229	NaCl		growth	2 %
116229	NaCl		growth	4 %
116229	NaCl		growth	6 %
116229	NaCl		growth	8 %
116229	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
116229	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	+	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
116229	17632 ChEBI	nitrate	-	reduction
116229	17632 ChEBI	nitrate	+	respiration
116229	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Enzymes

@ref	Value	Activity	Ec
116229	alcohol dehydrogenase	-	1.1.1.1
116229	amylase	-
116229	beta-galactosidase	+	3.2.1.23
116229	caseinase	-	3.4.21.50
116229	catalase	+	1.11.1.6
116229	lecithinase	-
116229	lysine decarboxylase	-	4.1.1.18
116229	ornithine decarboxylase	-	4.1.1.17
116229	oxidase	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116229	not determinedn.d.	-	-	-	-	-	+	-	-	+	+	+	+	+	-	-	-	-	+	-	-	-	-	-	+	+	-	-	+	-	+	+	+	-	-	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
1914	soil
67770	Soil
116229	Environment, Soil

Taxonmaps

69479

Global distribution of 16S sequence D78465 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	1
Soil Samples	11
Animal Samples	1
Plant Samples
Total Samples	13

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1914	1	Risk group (German classification) According to TRBA 466
116229	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42290v1 assembly for Paenibacillus alginolyticus DSM 5050 = NBRC 15375	scaffold	GCA_000422905	1122915.3	2524614879	1122915	30.93
67770	ASM400072v1 assembly for Paenibacillus alginolyticus DSM 5050 = NBRC 15375	contig	GCA_004000725	1122915.5		1122915	7.78

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Paenibacillus alginolyticus gene for 16S rRNA, partial sequence	AB073362	1497	59839
20218	Paenibacillus aliginolyticus DNA for 16S rRNA	D78465	1424	59839
20218	Paenibacillus alginolyticus gene for 16S rRNA, partial sequence, strain: NBRC 15375	AB680848	1467	59839
124043	Paenibacillus alginolyticus strain DSM 5050 16S ribosomal RNA gene, partial sequence.	MN728274	1497	59839

GC content

@ref	GC-content (mol%)	Method
1914	47.1-48.0
67770	47-49	Buoyant density centrifugation (BD)
67770	48	Buoyant density centrifugation (BD)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus alginolyticus DSM 5050 = NBRC 15375
NCBI: GCA_000422905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	85.20	no
125439	gram_stain	BacteriaNetⓘ	variable	84.30	no
125439	motility	BacteriaNetⓘ	yes	76.10	no
125439	spore_formation	BacteriaNetⓘ	yes	82.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus alginolyticus DSM 5050
PATRIC: 1122915.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	58.41	no
125438	anaerobic	anaerobicⓘ	no	95.07	no
125438	spore-forming	spore-formingⓘ	yes	88.53	no
125438	aerobic	aerobicⓘ	yes	74.22	no
125438	thermophilic	thermophileⓘ	no	93.65	no
125438	flagellated	motile2+ⓘ	yes	79.26	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Paenibacillus frigoriresistens Ming et al. 2012 as a later heterotypic synonym of Paenibacillus alginolyticus (Nakamura 1987) Shida et al. 1997.	Li B, Liang Z, Chen D, Mao W, Zhang R, Hu Z, Gao J.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006888	2025
	Suppressive potential of Paenibacillus strains isolated from the tomato phyllosphere against fusarium crown and root rot of tomato.	Sato I, Yoshida S, Iwamoto Y, Aino M, Hyakumachi M, Shimizu M, Takahashi H, Ando S, Tsushima S.	Microbes Environ	10.1264/jsme2.me13172	2014
Phylogeny	Differentiation of Paenibacillus larvae subsp. larvae, the cause of American foulbrood of honeybees, by using PCR and restriction fragment analysis of genes encoding 16S rRNA.	Alippi AM, Lopez AC, Aguilar OM.	Appl Environ Microbiol	10.1128/aem.68.7.3655-3660.2002	2002
	Improved Adhesion of Bacterial Cellulose on Plasma-Treated Cotton Fabric for Development of All-Cellulose Biocomposites.	Ogrizek L, Lamovsek J, Primc G, Leskovsek M, Vesel A, Mozetic M, Gorjanc M.	Molecules	10.3390/molecules29215009	2024
Phylogeny	Paenibacillus alba nov., isolated from peat soil.	Kim HS, Srinivasan S, Lee SS	Curr Microbiol	10.1007/s00284-015-0795-9	2015
Phylogeny	Paenibacillus arenilitoris sp. nov., isolated from seashore sand and genome mining revealed the biosynthesis potential as antibiotic producer.	Deng N, Huang H, Hu Y, Wang X, Mo K.	Antonie Van Leeuwenhoek	10.1007/s10482-022-01773-1	2022
	Paenibacillus silvestris sp. nov., Isolated from Forest Soil.	Kim J, Jung HS, Baek JH, Chun BH, Khan SA, Jeon CO.	Curr Microbiol	10.1007/s00284-020-02333-4	2021
Genetics	Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root.	Kampfer P, Lipski A, Lamothe L, Clermont D, Criscuolo A, McInroy JA, Glaeser SP.	Arch Microbiol	10.1007/s00203-022-03225-w	2022
Phylogeny	Paenibacillus ferrarius sp. nov., isolated from iron mineral soil.	Cao Y, Chen F, Li Y, Wei S, Wang G.	Int J Syst Evol Microbiol	10.1099/ijs.0.063552-0	2015
Phylogeny	Paenibacillus aestuarii sp. nov., isolated from an estuarine wetland.	Bae JY, Kim KY, Kim JH, Lee K, Cho JC, Cha CJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.011544-0	2010
Phylogeny	Paenibacillus anseongense sp. nov. a Silver Nanoparticle Producing Bacterium Isolated from Rhizospheric Soil.	Huq MA	Curr Microbiol	10.1007/s00284-020-02086-0	2020
Phylogeny	Paenibacillus aceris sp. nov., isolated from the rhizosphere of Acer okamotoanum, a plant native to Ulleungdo Island, Republic of Korea.	Hwang YJ, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001748	2017
Phylogeny	Paenibacillus qinlingensis sp. nov., an indole-3-acetic acid-producing bacterium isolated from roots of Sinopodophyllum hexandrum (Royle) Ying.	Xin K, Li M, Chen C, Yang X, Li Q, Cheng J, Zhang L, Shen X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001666	2017
Phylogeny	Paenibacillus oryzisoli sp. nov., isolated from the rhizosphere of rice.	Zhang J, Ma XT, Gao JS, Zhang CW, Zhao JJ, Zhang RJ, Ma LA, Zhang XX	Antonie Van Leeuwenhoek	10.1007/s10482-016-0777-3	2016
Phylogeny	Paenibacillus frigoriresistens sp. nov., a novel psychrotroph isolated from a peat bog in Heilongjiang, Northern China.	Ming H, Nie GX, Jiang HC, Yu TT, Zhou EM, Feng HG, Tang SK, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-012-9738-7	2012

References

#1914	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5050
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34117	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116229	Collection of Institut Pasteur ; Curators of the CIP; CIP 103122
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus alginolyticus (DSM 5050, NRRL NRS-1347, 1347)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000422905

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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