Name: Herminiimonas aquatilis 961126
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11305

Type strain:

Species: Herminiimonas aquatilis

Strain Designation: 961126

Culture col. no.: DSM 18803, CCUG 36956, CIP 108933

Strain history: CIP <- 2005, CCUG <- T. Lindberg, SLV, Uppsala, Sweden: strain 961126

NCBI tax ID(s): 345342 (species)

SI-ID 54684

CCUG 36956, CIP 108933, DSM 18803

Special Collections

Section

Herminiimonas aquatilis 961126 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from drinking water.

Gram-negative
motile
oval-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Herminiimonas*
	Species	**Herminiimonas aquatilis**
	Full Scientific Name (LPSN)	Herminiimonas aquatilis Kämpfer et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #116441]	Gram stain	negative

[Ref.: #116441]	Cell shape	oval-shaped

[Ref.: #116441]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7637]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #7637]

Culture medium growth

[Ref.: #7637]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7637]

Culture medium composition

expand / minimize

[Ref.: #33265]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #33265]

Culture medium growth

[Ref.: #33265]

Culture medium composition

expand / minimize

[Ref.: #116441]

Culture medium

CIP Medium 45

[Ref.: #116441]

Culture medium growth

[Ref.: #116441]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7637]	growth	25 °C
[Ref.: #33265]	growth	25 °C
[Ref.: #53509]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #53509]	Oxygen tolerance	aerobe
[Ref.: #116441]	Oxygen tolerance	obligate aerobe

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116441]		nitrate ChEBI	-	reduction
[Ref.: #116441]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #116441]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116441]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116441]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116441]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116441]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #116441]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116441]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116441]	11557	-	-	+	+	-	+	+	-	-	-	+	+	+	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7637]	Sample type/isolated from	drinking water
[Ref.: #7637]	Geographic location (country and/or sea, region)	Uppsala
[Ref.: #7637]	Country	Sweden
[Ref.: #7637]	Country ISO 3 Code	SWE
[Ref.: #7637]	Continent	Europe

[Ref.: #53509]	Sample type/isolated from	Water,municipal drinking water
[Ref.: #53509]	Sampling date	1996
[Ref.: #53509]	Geographic location (country and/or sea, region)	Almunge
[Ref.: #53509]	Country	Sweden
[Ref.: #53509]	Country ISO 3 Code	SWE
[Ref.: #53509]	Continent	Europe

[Ref.: #116441]	Sample type/isolated from	Environment, Water, municipal drinking water
[Ref.: #116441]	Geographic location (country and/or sea, region)	Uppsala
[Ref.: #116441]	Country	Sweden
[Ref.: #116441]	Country ISO 3 Code	SWE
[Ref.: #116441]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM085762 (>99% sequence identity) for Herminiimonas from Microbeatlas

Aquatic Samples	32
Soil Samples	80
Animal Samples	10
Plant Samples	44
Total Samples	166

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7637]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116441]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7637]	Herminiimonas aquatilis partial 16S rRNA gene, type strain CCUG 36956T	AM085762	1390	GenBank ENA	345342 tax ID

Availability in culture collections External links

[Ref.: #7637]

Culture collection no.

DSM 18803, CCUG 36956, CIP 108933

[Ref.: #80538]

SI-ID 54684

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Herminiimonas saxobsidens sp. nov., isolated from a lichen-colonized rock.	Lang E, Swiderski J, Stackebrandt E, Schumann P, Sproer C, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.65163-0	2007	*
Phylogeny	Herminiimonas arsenicoxydans sp. nov., a metalloresistant bacterium.	Muller D, Simeonova DD, Riegel P, Mangenot S, Koechler S, Lievremont D, Bertin PN, Lett MC	Int J Syst Evol Microbiol	10.1099/ijs.0.64308-0	2006	*
Phylogeny	Herminiimonas aquatilis sp. nov., a new species from drinking water.	Kampfer P, Busse HJ, Falsen E	Syst Appl Microbiol	10.1016/j.syapm.2005.12.009	2006	*

References

#7637

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18803

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33265 ; Curators of the CIP;
#53509 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 36956

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80538

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID54684.1 )

#116441 Collection of Institut Pasteur ; Curators of the CIP; CIP 108933
* These data were automatically processed and therefore are not curated

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