Strain identifier

BacDive ID: 11305

Type strain: Yes

Species: Herminiimonas aquatilis

Strain Designation: 961126

Strain history: CIP <- 2005, CCUG <- T. Lindberg, SLV, Uppsala, Sweden: strain 961126

NCBI tax ID(s): 345342 (species)

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General

@ref: 7637

BacDive-ID: 11305

DSM-Number: 18803

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, oval-shaped

description: Herminiimonas aquatilis 961126 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from drinking water.

NCBI tax id

  • NCBI tax id: 345342
  • Matching level: species

strain history

@refhistory
7637<- CCUG <- T. Lindberg, SLV Uppsala
116441CIP <- 2005, CCUG <- T. Lindberg, SLV, Uppsala, Sweden: strain 961126

doi: 10.13145/bacdive11305.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Herminiimonas
  • species: Herminiimonas aquatilis
  • full scientific name: Herminiimonas aquatilis Kämpfer et al. 2006

@ref: 7637

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Herminiimonas

species: Herminiimonas aquatilis

full scientific name: Herminiimonas aquatilis Kämpfer et al. 2006

strain designation: 961126

type strain: yes

Morphology

cell morphology

  • @ref: 116441
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: yes

colony morphology

  • @ref: 116441

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7637REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)yeshttps://mediadive.dsmz.de/medium/830cName: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
33265MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
116441CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
7637positivegrowth25mesophilic
33265positivegrowth25mesophilic
53509positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
53509aerobe
116441obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11644117632nitrate-reduction
11644116301nitrite-reduction

metabolite production

  • @ref: 116441
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
116441oxidase+
116441alcohol dehydrogenase-1.1.1.1
116441catalase-1.11.1.6
116441lysine decarboxylase+4.1.1.18
116441ornithine decarboxylase+4.1.1.17
116441urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116441--++-++---+++------+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
7637drinking waterUppsalaSwedenSWEEurope
53509Water,municipal drinking waterAlmungeSwedenSWEEurope1996
116441Environment, Water, municipal drinking waterUppsalaSwedenSWEEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Freshwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_45403.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_2343;97_23298;98_29431;99_45403&stattab=map
  • Last taxonomy: Herminiimonas
  • 16S sequence: AM085762
  • Sequence Identity:
  • Total samples: 166
  • soil counts: 80
  • aquatic counts: 32
  • animal counts: 10
  • plant counts: 44

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
76371Risk group (German classification)
1164411Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7637
  • description: Herminiimonas aquatilis partial 16S rRNA gene, type strain CCUG 36956T
  • accession: AM085762
  • length: 1390
  • database: ena
  • NCBI tax ID: 345342

External links

@ref: 7637

culture collection no.: DSM 18803, CCUG 36956, CIP 108933

straininfo link

  • @ref: 80538
  • straininfo: 54684

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16436326Herminiimonas aquatilis sp. nov., a new species from drinking water.Kampfer P, Busse HJ, Falsen ESyst Appl Microbiol10.1016/j.syapm.2005.12.0092006Bacterial Typing Techniques, Biogenic Polyamines/analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/isolation & purification, Fresh Water/*microbiology, Genes, rRNA, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/chemistry/*classification/genetics/*isolation & purification, Phylogeny, Quinones/analysis/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Water MicrobiologyEnzymology
Phylogeny16902005Herminiimonas arsenicoxydans sp. nov., a metalloresistant bacterium.Muller D, Simeonova DD, Riegel P, Mangenot S, Koechler S, Lievremont D, Bertin PN, Lett MCInt J Syst Evol Microbiol10.1099/ijs.0.64308-02006Aerobiosis, Arsenites/*metabolism, Catalase/metabolism, Culture Media, DNA, Bacterial/genetics, Fatty Acids/analysis, Genome, Bacterial, Molecular Sequence Data, Nitrates/metabolism, Nucleic Acid Hybridization, Oxalobacteraceae/chemistry/*classification/isolation & purification/physiology, Oxidation-Reduction, Oxidoreductases/metabolism, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sewage/microbiology, Species SpecificityMetabolism
Phylogeny17978229Herminiimonas saxobsidens sp. nov., isolated from a lichen-colonized rock.Lang E, Swiderski J, Stackebrandt E, Schumann P, Sproer C, Sahin NInt J Syst Evol Microbiol10.1099/ijs.0.65163-02007Bacterial Typing Techniques, *Calcium Carbonate, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Lichens/growth & development/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/chemistry/*classification/genetics/isolation & purification, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, TurkeyGenetics

Reference

@idauthorscataloguedoi/urltitle
7637Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18803)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18803
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33265Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6618
53509Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 36956)https://www.ccug.se/strain?id=36956
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80538Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID54684.1StrainInfo: A central database for resolving microbial strain identifiers
116441Curators of the CIPCollection of Institut Pasteur (CIP 108933)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108933