Herminiimonas saxobsidens (DSM 18748, CCM 7436, NEU 1218)

Name: Herminiimonas saxobsidens (DSM 18748, CCM 7436, NEU 1218)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11306

Type strain

Strain Designation NS11

Culture col. no. DSM 18748 CCM 7436 NEU 1218 NS11

NCBI tax ID(s) 427333

Special Collections DSMZ Literature strains

History <- N. Sahin; NS11

Links

Herminiimonas saxobsidens NS11 is an aerobe, Gram-negative, motile bacterium that was isolated from lichen colonized rock.

Gram-negative motile ovoid-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404429

DSM 18748,CCUG 59860T

@ref 20215

Last LPSN update 2026-02-09 11:20:30

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Oxalobacteraceae

Genus Herminiimonas

Species Herminiimonas saxobsidens

Full scientific name Herminiimonas saxobsidens Lang et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32228	negative	0.8 µm	0.4 µm	ovoid-shaped

Pigmentation

32228

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7682	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7682	positive	growth	30
32228	positive	growth	04-37
32228	positive	optimum	20.5

Culture pH

@ref	Ability	Type	PH
32228	positive	optimum	7.25

Physiology and metabolism

Oxygen tolerance

32228

Oxygen toleranceaerobe

Spore formation

32228

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32228	NaCl	positive	growth	0-2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32228	30089 ChEBI	acetate	+	carbon source
32228	16449 ChEBI	alanine	+	carbon source
32228	22599 ChEBI	arabinose	+	carbon source
32228	15740 ChEBI	formate	+	carbon source
32228	24996 ChEBI	lactate	+	carbon source
32228	25115 ChEBI	malate	+	carbon source
32228	51850 ChEBI	methyl pyruvate	+	carbon source
32228	17632 ChEBI	nitrate	+	reduction
32228	17272 ChEBI	propionate	+	carbon source
32228	30031 ChEBI	succinate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32228	alkaline phosphatase	+	3.1.3.1
32228	catalase	+	1.11.1.6
32228	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	-
#Host	#Other	#Lichen

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7682	lichen colonized rock	Mugla	Turkey	TUR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AM493906 (>99% sequence identity) for Herminiimonas from Microbeatlas

Aquatic Samples	491
Soil Samples	780
Animal Samples	395
Plant Samples	819
Total Samples	2485

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7682	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Herminiimonas saxobsidens gene for 16S rRNA, partial sequence, strain: NEU 1218	AB512141	1485		427333
7682	Herminiimonas saxobsidens 16S rRNA gene, type strain NS11T	AM493906	1504		427333

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Herminiimonas saxobsidens sp. nov., isolated from a lichen-colonized rock.	Lang E, Swiderski J, Stackebrandt E, Schumann P, Sproer C, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.65163-0	2007

References

#7682	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18748
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#28470	IJSEM 2618 2007 ( DOI 10.1099/ijs.0.65163-0 , PubMed 17978229 )
#32228	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28470
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Herminiimonas saxobsidens (DSM 18748, CCM 7436, NEU 1218)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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