Marinospirillum celere (DSM 18438, LMG 24610, VKM 2416)

Name: Marinospirillum celere (DSM 18438, LMG 24610, VKM 2416)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11277

Type strain

Strain Designation v1c_Sn-red

Culture col. no. DSM 18438 LMG 24610 VKM 2416 VKM B-2416 v1c_Sn-red

NCBI tax ID(s) 497722 1122252

Special Collections DSMZ Literature strains

History <- Z. B. Namsaraev, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; v1c_Sn-red <- V. M. Gorlenko

Links

Marinospirillum celere v1c_Sn-red is an aerobe, Gram-negative, motile bacterium that was isolated from water–sediment slurry from a hot spring .

Gram-negative motile spiral-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 344054

LMG 24610,DSM 18438,VKM B-2416

@ref 20215

Last LPSN update 2026-02-09 11:20:30

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Oceanospirillaceae

Genus Marinospirillum

Species Marinospirillum celere

Full scientific name Marinospirillum celere Namsaraev et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29125	negative	1.4-15 µm	0.2-0.4 µm	spiral-shaped
125438	negative				99
125439	negative				99.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7471	MARINOSPIRILLUM CELERE MEDIUM (DSMZ Medium 1212)		Medium recipe at MediaDive	Name: MARINOSPIRILLUM CELERE (DSMZ Medium 1212) Composition: NaCl 25.0 g/l Agar 15.0 g/l Na2CO3 5.0 g/l NaHCO3 5.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Sodium DL-lactate 1.0 g/l Na2SO4 0.5 g/l NH4Cl 0.5 g/l KH2PO4 0.5 g/l KCl 0.5 g/l MgSO4 x 7 H2O 0.2 g/l HCl 0.001925 g/l FeSO4 x 7 H2O 0.0014881 g/l H3BO3 0.000297619 g/l CoCl2 x 6 H2O 0.000188492 g/l MnCl2 x 4 H2O 9.92064e-05 g/l ZnCl2 6.94444e-05 g/l Na2MoO4 x 2 H2O 3.57143e-05 g/l NiCl2 x 6 H2O 2.38095e-05 g/l Vitamin B12 1.5e-05 g/l CuCl2 x 2 H2O 1.98413e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7471	positive	growth	35
29125	positive	growth	13-55
29125	positive	optimum	40

Culture pH

@ref	Ability	Type	PH	PH range
29125	positive	optimum	9.5
29125	positive	growth	8.0-10.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

29125

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
29125
125438		94.871
125439		99.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29125	NaCl	positive	growth	0.5-12 %
29125	NaCl	positive	optimum	2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29125	30089 ChEBI	acetate	+	carbon source
29125	24996 ChEBI	lactate	+	carbon source
29125	15361 ChEBI	pyruvate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29125	catalase	+	1.11.1.6
29125	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	ubiquinone biosynthesis	100	7 of 7
66794	teichoic acid biosynthesis	100	1 of 1
66794	ethanol fermentation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	biotin biosynthesis	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	vitamin B6 metabolism	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	methylglyoxal degradation	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	CMP-KDO biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	sulfate reduction	69.23	9 of 13
66794	methionine metabolism	69.23	18 of 26
66794	alanine metabolism	68.97	20 of 29
66794	lipid metabolism	67.74	21 of 31
66794	IAA biosynthesis	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	purine metabolism	65.96	62 of 94
66794	tyrosine metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	non-pathway related	60.53	23 of 38
66794	cellulose degradation	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	oxidative phosphorylation	58.24	53 of 91
66794	lysine metabolism	57.14	24 of 42
66794	polyamine pathway	56.52	13 of 23
66794	pyrimidine metabolism	55.56	25 of 45
66794	cysteine metabolism	55.56	10 of 18
66794	tryptophan metabolism	55.26	21 of 38
66794	histidine metabolism	55.17	16 of 29
66794	urea cycle	53.85	7 of 13
66794	suberin monomers biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	Entner Doudoroff pathway	50	5 of 10
66794	kanosamine biosynthesis II	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	sulfopterin metabolism	50	2 of 4
66794	arginine metabolism	50	12 of 24
66794	isoprenoid biosynthesis	50	13 of 26
66794	quinate degradation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	vitamin K metabolism	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	glycogen metabolism	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	ketogluconate metabolism	37.5	3 of 8
66794	phenol degradation	35	7 of 20
66794	cyanate degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	degradation of hexoses	27.78	5 of 18
66794	arachidonic acid metabolism	27.78	5 of 18
66794	pentose phosphate pathway	27.27	3 of 11
66794	degradation of sugar alcohols	25	4 of 16
66794	vitamin E metabolism	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Alkaline	-
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7471	water–sediment slurry from a hot spring (40 °C, pH 9.3, salinity 25 g/L)	California, Mono Lake	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7471	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2600254929 annotated assembly for Marinospirillum celere DSM 18438	scaffold	GCA_900112235	1122252.3	2600254929	1122252	76.35

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7471	UNVERIFIED_ORG: Marinospirillum celere DSM 18438 16S ribosomal RNA gene, partial sequence	EU375807	1465		497722

GC content

@ref	GC-content (mol%)	Method
7471	52.3	thermal denaturation, midpoint method (Tm)
29125	52.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinospirillum celere DSM 18438
NCBI: GCA_900112235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	71.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	motility	BacteriaNetⓘ	yes	87.10	no
125439	spore_formation	BacteriaNetⓘ	no	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinospirillum celere DSM 18438
NCBI: GCA_900112235.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	87.07	no
125438	aerobic	aerobicⓘ	yes	78.81	yes
125438	spore-forming	spore-formingⓘ	no	94.87	yes
125438	thermophilic	thermophileⓘ	no	95.53	yes
125438	flagellated	motile2+ⓘ	yes	80.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	The PHY Domain Dimer Interface of Bacteriophytochromes Mediates Cross-talk between Photosensory Modules and Output Domains.	Bohm C, Todorovic N, Balasso M, Gourinchas G, Winkler A.	J Mol Biol	10.1016/j.jmb.2021.167092	2021
Genetics	Genomic insights into Marinospirillum alkalitolerans sp. nov., a novel PHB producing bacterium from an Indian impact crater, and an emended description of family Oceanospirillaceae.	Joshi A, Thite S, Godbole D, Boruah D, Sindhu DK, Prabhu A, Joseph N, Yadav A, Sharma A, Lodha T.	Antonie Van Leeuwenhoek	10.1007/s10482-024-02059-4	2025
Phylogeny	Terasakiispira papahanaumokuakeensis gen. nov., sp. nov., a gammaproteobacterium from Pearl and Hermes Atoll, Northwestern Hawaiian Islands.	Zepeda VK, Busse HJ, Golke J, Saw JHW, Alam M, Donachie SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000438	2015
Phylogeny	Marinospirillum celere sp. nov., a novel haloalkaliphilic, helical bacterium isolated from Mono Lake.	Namsaraev Z, Akimov V, Tsapin A, Barinova E, Nealson K, Gorlenko V	Int J Syst Evol Microbiol	10.1099/ijs.0.006825-0	2009

References

#7471	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18438
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25551	IJSEM 2329 2009 ( DOI 10.1099/ijs.0.006825-0 , PubMed 19620364 )
#29125	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25551
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinospirillum celere (DSM 18438, LMG 24610, VKM 2416)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900112235

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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