Marinospirillum minutulum (DSM 6287, ATCC 19193, NCIMB 1347)

Name: Marinospirillum minutulum (DSM 6287, ATCC 19193, NCIMB 1347)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11276

Type strain

Culture col. no. DSM 6287 ATCC 19193 NCIMB 1347 VPI 40 CIP 103376 1 more

NCBI tax ID(s) 1122212 64974

Special Collections DSMZ CIP

History <- NCIMB <- Y. Terasaki <- N. Watanabe CIP <- 1990, NCMB <- 1966, Y. Terasaki, Spirillum halophilum <- N. Watanabe: strain VPI 40

Links

Marinospirillum minutulum DSM 6287 is a mesophilic prokaryote that was isolated from Other, Putrid infusion, marine shellfish.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92361

NCMB 1347,LMG 5334,ATCC 19193,IFO 15450,CIP 103376,DSM 6287,NCIMB 1347,NBRC 15450,CGMCC 1.2716

@ref 20215

Last LPSN update 2026-02-09 11:20:30

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Oceanospirillaceae

Genus Marinospirillum

Species Marinospirillum minutulum

Full scientific name Marinospirillum minutulum (Watanabe 1959) Satomi et al. 1998

Synonyms (2)

Oceanospirillum minutulum
"Spirillum minutulum"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.8
125438	negative	97.75

Multimedia

@ref:	66793
multimedia content:	EM_DSM_6287_1.jpg
multimedia.multimedia content:	EM_DSM_6287_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_6287_2.jpg
multimedia.multimedia content:	EM_DSM_6287_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_6287_3.jpg
multimedia.multimedia content:	EM_DSM_6287_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_6287_4.jpg
multimedia.multimedia content:	EM_DSM_6287_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_6287_5.jpg
multimedia.multimedia content:	EM_DSM_6287_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2573	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33073	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120963	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2573	positive	growth	30	mesophilic
33073	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	90.5

Spore formation

@ref	Spore formation	Confidence
125439		99.9
125438		94.738

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Isolation date
120963	Other, Putrid infusion, marine shellfish	1959

Taxonmaps

69479

Global distribution of 16S sequence AB006769 (>99% sequence identity) for Marinospirillum minutulum from Microbeatlas

Aquatic Samples	569
Soil Samples	568
Animal Samples	1501
Plant Samples	69
Total Samples	2707

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2573	1	Risk group (German classification) According to TRBA 466
120963	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42232v1 assembly for Marinospirillum minutulum DSM 6287	scaffold	GCA_000422325	1122212.3	2524614573	1122212	75.01

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Marinospirillum minutulum gene for 16S rRNA, partial sequence, strain: ATCC 19193	AB006769	1456		64974
20218	Marinospirillum minutulum gene for 16S rRNA, partial sequence, strain: NBRC 15450	AB680862	1461		64974

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinospirillum minutulum DSM 6287
NCBI: GCA_000422325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.90	no
125439	motility	BacteriaNetⓘ	yes	80.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinospirillum minutulum DSM 6287 DSM 6287
NCBI: GCA_000422325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.75	no
125438	anaerobic	anaerobicⓘ	no	88.81	no
125438	aerobic	aerobicⓘ	yes	67.93	no
125438	spore-forming	spore-formingⓘ	no	94.74	no
125438	thermophilic	thermophileⓘ	no	94.15	yes
125438	flagellated	motile2+ⓘ	yes	80.03	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Shotgun and Hi-C Sequencing Datasets for Binning Wheat Rhizosphere Microbiome.	Regmi R, Anderson J, Burgess L, Mangelson H, Liachko I, Vadakattu G.	Sci Data	10.1038/s41597-025-04651-3	2025
Phylogeny	Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities.	Kent AD, Smith DJ, Benson BJ, Triplett EW.	Appl Environ Microbiol	10.1128/aem.69.11.6768-6776.2003	2003
Enzymology	Quantitative rRNA-targeted solution-based hybridization assay using peptide nucleic acid molecular beacons.	Li X, Morgenroth E, Raskin L.	Appl Environ Microbiol	10.1128/aem.01002-08	2008
Metabolism	Bacteria belonging to the genus cycloclasticus play a primary role in the degradation of aromatic hydrocarbons released in a marine environment.	Kasai Y, Kishira H, Harayama S.	Appl Environ Microbiol	10.1128/aem.68.11.5625-5633.2002	2002
Phylogeny	Marinospirillum gen. nov., with descriptions of Marinospirillum megaterium sp. nov., isolated from kusaya gravy, and transfer of Oceanospirillum minutulum to Marinospirillum minutulum comb. nov.	Satomi M, Kimura B, Hayashi M, Shouzen Y, Okuzumi M, Fujii T	Int J Syst Bacteriol	10.1099/00207713-48-4-1341	1998

References

#2573	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6287
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33073	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120963	Collection of Institut Pasteur ; Curators of the CIP; CIP 103376
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinospirillum minutulum (DSM 6287, ATCC 19193, NCIMB 1347)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000422325

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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