Marinospirillum minutulum | Type strain | DSM 6287, ATCC 19193, NCIMB 1347, VPI 40, CIP 103376, LMG 5334 | BacDiveID:11276

Strain identifier

BacDive ID: 11276

Type strain:

Species: Marinospirillum minutulum

Culture col. no.: DSM 6287, ATCC 19193, NCIMB 1347, VPI 40, CIP 103376, LMG 5334

Strain history: CIP <- 1990, NCMB <- 1966, Y. Terasaki, Spirillum halophilum <- N. Watanabe: strain VPI 40

NCBI tax ID(s): 1122212 (strain), 64974 (species)

SI-ID 92361

NCMB 1347, LMG 5334, ATCC 19193, IFO 15450, CIP 103376, DSM 6287, NCIMB 1347, NBRC 15450, CGMCC 1.2716

Section

Marinospirillum minutulum DSM 6287 is a mesophilic, motile bacterium that was isolated from Other, Putrid infusion, marine shellfish.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Marinospirillum*
	Species	**Marinospirillum minutulum**
	Full Scientific Name (LPSN)	Marinospirillum minutulum (Watanabe 1959) Satomi et al. 1998

	Synonym	"Spirillum* minutulum"*
	Synonym	Oceanospirillum minutulum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %92.841

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

Marine agar (MA)

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #120963]

Culture medium

CIP Medium 13

[Ref.: #120963]

Culture medium growth

[Ref.: #120963]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #2573]			growth	30 °C
[Ref.: #33073]			growth	25 °C

[Ref.: #2573]	Temperature range	mesophilic
[Ref.: #33073]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.937

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #120963]	Sample type/isolated from	Other, Putrid infusion, marine shellfish
[Ref.: #120963]	Isolation date	1959
* marker position based on {}

Global distribution of 16S sequence AB006769 (>99% sequence identity) for Marinospirillum minutulum from Microbeatlas

Aquatic Samples	569
Soil Samples	568
Animal Samples	1501
Plant Samples	69
Total Samples	2707

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2573]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120963]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Marinospirillum minutulum gene for 16S rRNA, partial sequence, strain: ATCC 19193	AB006769	1456	ENA	64974 tax ID	*
[Ref.: #20218]	Marinospirillum minutulum gene for 16S rRNA, partial sequence, strain: NBRC 15450	AB680862	1461	ENA	64974 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinospirillum minutulum DSM 6287	GCA_000422325	scaffold	GenBank	1122212 tax ID	*
[Ref.: #66792]	Marinospirillum minutulum DSM 6287	1122212.3	wgs	PATRIC	1122212 tax ID	*
[Ref.: #66792]	Marinospirillum minutulum DSM 6287	2524614573	draft	JGI IMG/M	1122212 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinospirillum minutulum DSM 6287 DSM 6287 NCBI: GCA_000422325.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinospirillum minutulum DSM 6287 DSM 6287 NCBI: GCA_000422325.1
[Ref.: #69480]	motile	yes	90.655	no
[Ref.: #69480]	flagellated	yes	67.156	no
[Ref.: #69480]	gram-positive	no	99.222	no
[Ref.: #69480]	anaerobic	no	93.463	no
[Ref.: #69480]	aerobic	yes	78.728	no
[Ref.: #69480]	halophile	yes	71.275	no
[Ref.: #69480]	spore-forming	no	95.06	no
[Ref.: #69480]	thermophile	no	99.053	yes
[Ref.: #69480]	glucose-util	no	76.461	no
[Ref.: #69480]	glucose-ferment	no	84.963	no

Availability in culture collections External links

Culture collection no.

DSM 6287, ATCC 19193, NCIMB 1347, VPI 40, CIP 103376, LMG 5334

SI-ID 92361

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinospirillum gen. nov., with descriptions of Marinospirillum megaterium sp. nov., isolated from kusaya gravy, and transfer of Oceanospirillum minutulum to Marinospirillum minutulum comb. nov.	Satomi M, Kimura B, Hayashi M, Shouzen Y, Okuzumi M, Fujii T	Int J Syst Bacteriol	10.1099/00207713-48-4-1341	1998	*

References

#2573

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6287

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33073 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80509

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92361.1 )

#120963 Collection of Institut Pasteur ; Curators of the CIP; CIP 103376
* These data were automatically processed and therefore are not curated

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