Strain identifier
BacDive ID: 11277
Type strain: 
Species: Marinospirillum celere
Strain Designation: v1c_Sn-red
Strain history: <- Z. B. Namsaraev, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; v1c_Sn-red <- V. M. Gorlenko
NCBI tax ID(s): 497722 (strain), 1122252 (species)
version 8.1 (current version)
General
@ref: 7471
BacDive-ID: 11277
DSM-Number: 18438
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, spiral-shaped
description: Marinospirillum celere v1c_Sn-red is an aerobe, mesophilic, Gram-negative bacterium that was isolated from water–sediment slurry from a hot spring .
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1122252 | species |
| 497722 | strain |
strain history
- @ref: 7471
- history: <- Z. B. Namsaraev, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; v1c_Sn-red <- V. M. Gorlenko
doi: 10.13145/bacdive11277.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Oceanospirillaceae
- genus: Marinospirillum
- species: Marinospirillum celere
- full scientific name: Marinospirillum celere Namsaraev et al. 2009
@ref: 7471
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Oceanospirillaceae
genus: Marinospirillum
species: Marinospirillum celere
full scientific name: Marinospirillum celere Namsaraev et al. 2009
strain designation: v1c_Sn-red
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 29125 | negative | 1.4-15 µm | 0.2-0.4 µm | spiral-shaped | yes | |
| 69480 | yes | 92.816 | ||||
| 69480 | negative | 99.99 |
Culture and growth conditions
culture medium
- @ref: 7471
- name: MARINOSPIRILLUM CELERE MEDIUM (DSMZ Medium 1212)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1212
- composition: Name: MARINOSPIRILLUM CELERE (DSMZ Medium 1212) Composition: NaCl 25.0 g/l Agar 15.0 g/l Na2CO3 5.0 g/l NaHCO3 5.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Sodium DL-lactate 1.0 g/l Na2SO4 0.5 g/l NH4Cl 0.5 g/l KH2PO4 0.5 g/l KCl 0.5 g/l MgSO4 x 7 H2O 0.2 g/l HCl 0.001925 g/l FeSO4 x 7 H2O 0.0014881 g/l H3BO3 0.000297619 g/l CoCl2 x 6 H2O 0.000188492 g/l MnCl2 x 4 H2O 9.92064e-05 g/l ZnCl2 6.94444e-05 g/l Na2MoO4 x 2 H2O 3.57143e-05 g/l NiCl2 x 6 H2O 2.38095e-05 g/l Vitamin B12 1.5e-05 g/l CuCl2 x 2 H2O 1.98413e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7471 | positive | growth | 35 | mesophilic |
| 29125 | positive | growth | 13-55 | |
| 29125 | positive | optimum | 40 | thermophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29125 | positive | growth | 8.0-10.5 | alkaliphile |
| 29125 | positive | optimum | 9.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 29125
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29125 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.983 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29125 | NaCl | positive | growth | 0.5-12 % |
| 29125 | NaCl | positive | optimum | 2 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29125 | 30089 | acetate | + | carbon source |
| 29125 | 24996 | lactate | + | carbon source |
| 29125 | 15361 | pyruvate | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29125 | catalase | + | 1.11.1.6 |
| 29125 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 7471
- sample type: water–sediment slurry from a hot spring (40 °C, pH 9.3, salinity 25 g/L)
- geographic location: California, Mono Lake
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Alkaline | |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 7471
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7471
- description: UNVERIFIED: Marinospirillum celere DSM 18438 16S ribosomal RNA gene, partial sequence
- accession: EU375807
- length: 1465
- database: ena
- NCBI tax ID: 497722
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinospirillum celere DSM 18438 | GCA_900112235 | scaffold | ncbi | 1122252 |
| 66792 | Marinospirillum celere strain DSM 18438 | 1122252.3 | wgs | patric | 1122252 |
| 66792 | Marinospirillum celere DSM 18438 | 2600254929 | draft | img | 1122252 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 7471 | 52.3 | thermal denaturation, midpoint method (Tm) |
| 29125 | 52.3 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 92.828 | yes |
| flagellated | yes | 82.768 | no |
| gram-positive | no | 99.238 | yes |
| anaerobic | no | 94.536 | no |
| aerobic | yes | 84.697 | yes |
| halophile | yes | 78.901 | no |
| spore-forming | no | 94.327 | no |
| glucose-ferment | no | 86.524 | no |
| thermophile | no | 97.038 | no |
| glucose-util | no | 67.048 | no |
External links
@ref: 7471
culture collection no.: DSM 18438, LMG 24610, VKM 2416, VKM B-2416
straininfo link
- @ref: 80510
- straininfo: 344054
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19620364 | Marinospirillum celere sp. nov., a novel haloalkaliphilic, helical bacterium isolated from Mono Lake. | Namsaraev Z, Akimov V, Tsapin A, Barinova E, Nealson K, Gorlenko V | Int J Syst Evol Microbiol | 10.1099/ijs.0.006825-0 | 2009 | Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella, Fresh Water/*microbiology, Hydrogen-Ion Concentration, Locomotion, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Oceanospirillaceae/*classification/genetics/*isolation & purification/physiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Ubiquinone/analysis, United States | Genetics |
| Phylogeny | 26297573 | Terasakiispira papahanaumokuakeensis gen. nov., sp. nov., a gammaproteobacterium from Pearl and Hermes Atoll, Northwestern Hawaiian Islands. | Zepeda VK, Busse HJ, Golke J, Saw JHW, Alam M, Donachie SP | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000438 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flagella, Gammaproteobacteria/*classification/genetics/isolation & purification, Hawaii, Islands, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, Polyamines/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, *Water Microbiology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 7471 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18438) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18438 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 29125 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25551 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
| 80510 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID344054.1 | StrainInfo: A central database for resolving microbial strain identifiers |