Name: Marinomonas communis Baumann 8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11268

Type strain:

Species: Marinomonas communis

Strain Designation: Baumann 8

Culture col. no.: CECT 5003, IAM 12914, JCM 20766, DSM 5604, ATCC 27118, CCUG 16012, CIP 74.01, LMG 2864, NCMB 1961, CIP 74.1, NBRC 102224, NCIMB 1961

Strain history: IAM 12914 <-- ATCC 27118 <-- P. Baumann 8.

NCBI tax ID(s): 28254 (species)

Other strains from Marinomonas communis

M. communis J63, KCTC 22118, JCM 14948, LMG ...

Section

Marinomonas communis Baumann 8 is a mesophilic bacterium that was isolated from surface seawater enriched with DL-beta-hydroxybutyrate.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Marinomonas*
	Species	**Marinomonas communis**
	Full Scientific Name (PNU)	Marinomonas communis (Baumann et al. 1972) van Landschoot and De Ley 1984

	Synonym	Alteromonas communis
	Synonym	Marinomonas basaltis
	Synonym	Oceanospirillum commune

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #69480]	Motility	yes Confidence in %92.822

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2251]

Culture medium

MARINOMONAS VAGA MEDIUM (DSMZ Medium 617)

[Ref.: #2251]

Culture medium growth

[Ref.: #2251]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2251]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2251]	growth	25 °C
[Ref.: #46414]	growth	30 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #2251]	Temperature range	mesophilic
[Ref.: #46414]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2251]	Sample type/isolated from	surface seawater enriched with DL-beta-hydroxybutyrate
[Ref.: #2251]	Geographic location (country and/or sea, region)	off coast of Oahu
[Ref.: #2251]	Country	Hawaii
[Ref.: #2251]	Country ISO 3 Code	USA
[Ref.: #2251]	Continent	Australia and Oceania

[Ref.: #46414]	Sample type/isolated from	Seawater

[Ref.: #67770]	Sample type/isolated from	Seawater
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681738 (>99% sequence identity) for Marinomonas communis from Microbeatlas

Aquatic Samples	487
Soil Samples	8
Animal Samples	57
Plant Samples	24
Total Samples	576

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2251]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Marinomonas communis 16S rRNA	D11181	215	ENA	28254 tax ID	*
[Ref.: #20218]	Marinomonas communis 16S rRNA	D11230	129	ENA	28254 tax ID	*
[Ref.: #20218]	Marinomonas communis 16S rRNA	D11279	191	ENA	28254 tax ID	*
[Ref.: #20218]	Marinomonas communis strain LMG 2864 16S ribosomal RNA gene, partial sequence	DQ011528	1461	ENA	28254 tax ID	*
[Ref.: #20218]	Marinomonas communis gene for 16S rRNA, partial sequence, strain: NBRC 102224	AB681738	1464	ENA	28254 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Marinomonas communis DSM 5604	GCA_004363305	scaffold	GenBank	28254 tax ID
[Ref.: #66792]	Marinomonas communis strain DSM 5604	28254.3	wgs	PATRIC	28254 tax ID	*
[Ref.: #66792]	Marinomonas communis DSM 5604	2757320362	draft	JGI IMG/M	28254 tax ID	*

[Ref.: #67770]

GC-content

48 mol%

Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinomonas communis DSM 5604 NCBI: GCA_004363305.1
[Ref.: #69480]	spore-forming	no	99.991	yes
[Ref.: #69480]	anaerobic	no	98.878	no
[Ref.: #69480]	gram-positive	no	99.989	yes
[Ref.: #69480]	thermophile	no	99.944	yes
[Ref.: #69480]	motile	yes	92.822	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinomonas communis DSM 5604 NCBI: GCA_004363305.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #2251]

Culture collection no.

CECT 5003, IAM 12914, JCM 20766, DSM 5604, ATCC 27118, CCUG 16012, CIP 74.01, LMG 2864, NCMB 1961, CIP 74.1, NBRC 102224, NCIMB 1961

[Ref.: #20218]

Associated Passport(s) in StrainInfo

159301, 15001, 15003, 240476, 15000, 15005

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinomonas piezotolerans sp. nov., isolated from deep-sea sediment of the Yap Trench, Pacific Ocean.	Yu L, Zhou Z, Wei S, Xu X, Wang Q, Xu G, Tang X, Yang Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.003227	2019	*
Phylogeny	Marinomonas basaltis sp. nov., a marine bacterium isolated from black sand.	Chang HW, Roh SW, Kim KH, Nam YD, Yoon JH, Oh HM, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.65724-0	2008	*
Pathogenicity	Influence of lipopolysaccharides and lipids A from some marine bacteria on spontaneous and Escherichia coli LPS-induced TNF-alpha release from peripheral human blood cells.	Vorobeva EV, Krasikova IN, Solov'eva TF	Biochemistry (Mosc)	10.1134/s000629790607008x	2006	*
Enzymology	[The structure of uncommon lipid A from the marine bacterium Marinomonas communis ATCC 27118T].	Vorob'eva EV, Dmitrenok AS, Dmitrenok PS, Isakov VV, Krasikova IN, Solov'eva TF	Bioorg Khim		2005	*
Phylogeny	Marinomonas ushuaiensis sp. nov., isolated from coastal sea water in Ushuaia, Argentina, sub-Antarctica.	Prabagaran SR, Suresh K, Manorama R, Delille D, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.63363-0	2005	*
Cultivation	[Diversity in the monosaccharide composition of antigenic polysaccharides from proteobacteria Pseudoalteromonas and Marinomonas genera].	Gorshkova NM, Gorshkova RP, Ivanova EP, Nazarenko EL, Zubkov VA	Mikrobiologiia		2001	*

References

#2251

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5604

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#46414 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 16012

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Marinomonas communis DSM 5604

Marinomonas communis DSM 5604

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