Strain identifier
BacDive ID: 11268
Type strain: 
Species: Marinomonas communis
Strain Designation: Baumann 8
Strain history: IAM 12914 <-- ATCC 27118 <-- P. Baumann 8.
NCBI tax ID(s): 28254 (species)
version 8.1 (current version)
General
@ref: 2251
BacDive-ID: 11268
DSM-Number: 5604
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Marinomonas communis Baumann 8 is a mesophilic, motile bacterium that was isolated from surface seawater enriched with DL-beta-hydroxybutyrate.
NCBI tax id
- NCBI tax id: 28254
- Matching level: species
strain history
| @ref | history |
|---|---|
| 2251 | <- LMG <- ATCC (Alteromonas communis) <- P. Baumann |
| 67770 | IAM 12914 <-- ATCC 27118 <-- P. Baumann 8. |
doi: 10.13145/bacdive11268.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Oceanospirillaceae
- genus: Marinomonas
- species: Marinomonas communis
- full scientific name: Marinomonas communis (Baumann et al. 1972) van Landschoot and De Ley 1984
synonyms
@ref synonym 20215 Alteromonas communis 20215 Marinomonas basaltis 20215 Oceanospirillum commune
@ref: 2251
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Oceanospirillaceae
genus: Marinomonas
species: Marinomonas communis
full scientific name: Marinomonas communis (Baumann et al. 1972) van Landschoot and De Ley 1984
strain designation: Baumann 8
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.822 | |
| 69480 | 99.989 | negative |
Culture and growth conditions
culture medium
- @ref: 2251
- name: MARINOMONAS VAGA MEDIUM (DSMZ Medium 617)
- growth: yes
- link: https://mediadive.dsmz.de/medium/617
- composition: Name: MARINOMONAS VAGA MEDIUM (DSMZ Medium 617) Composition: NaCl 30.0 g/l Agar 15.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2251 | positive | growth | 25 | mesophilic |
| 46414 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.991 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 2251 | surface seawater enriched with DL-beta-hydroxybutyrate | off coast of Oahu | Hawaii | USA | Australia and Oceania |
| 46414 | Seawater | ||||
| 67770 | Seawater |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_47123.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_113;96_2465;97_3008;98_31855;99_47123&stattab=map
- Last taxonomy: Marinomonas communis
- 16S sequence: AB681738
- Sequence Identity:
- Total samples: 576
- soil counts: 8
- aquatic counts: 487
- animal counts: 57
- plant counts: 24
Safety information
risk assessment
- @ref: 2251
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Marinomonas communis 16S rRNA | D11181 | 215 | ena | 28254 |
| 20218 | Marinomonas communis 16S rRNA | D11230 | 129 | ena | 28254 |
| 20218 | Marinomonas communis 16S rRNA | D11279 | 191 | ena | 28254 |
| 20218 | Marinomonas communis strain LMG 2864 16S ribosomal RNA gene, partial sequence | DQ011528 | 1461 | ena | 28254 |
| 20218 | Marinomonas communis gene for 16S rRNA, partial sequence, strain: NBRC 102224 | AB681738 | 1464 | ena | 28254 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinomonas communis strain DSM 5604 | 28254.3 | wgs | patric | 28254 |
| 66792 | Marinomonas communis DSM 5604 | 2757320362 | draft | img | 28254 |
| 67770 | Marinomonas communis DSM 5604 | GCA_004363305 | scaffold | ncbi | 28254 |
GC content
- @ref: 67770
- GC-content: 48
- method: Buoyant density centrifugation (BD)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 94.96 | no |
| gram-positive | no | 98.8 | no |
| anaerobic | no | 96.573 | no |
| halophile | yes | 81.001 | no |
| spore-forming | no | 95.451 | no |
| glucose-util | yes | 91.932 | no |
| flagellated | yes | 95.301 | no |
| aerobic | yes | 87.7 | no |
| thermophile | no | 99.48 | yes |
| glucose-ferment | no | 85.729 | no |
External links
@ref: 2251
culture collection no.: CECT 5003, IAM 12914, JCM 20766, DSM 5604, ATCC 27118, CCUG 16012, CIP 74.01, LMG 2864, NCMB 1961, CIP 74.1, NBRC 102224, NCIMB 1961
straininfo link
- @ref: 80501
- straininfo: 390
literature
| topic | Pubmed-ID | title | authors | journal | year | mesh | topic2 | DOI |
|---|---|---|---|---|---|---|---|---|
| Cultivation | 11763785 | [Diversity in the monosaccharide composition of antigenic polysaccharides from proteobacteria Pseudoalteromonas and Marinomonas genera]. | Gorshkova NM, Gorshkova RP, Ivanova EP, Nazarenko EL, Zubkov VA | Mikrobiologiia | 2001 | Antigens, Bacterial/*chemistry, Culture Media, Monosaccharides/*chemistry, Polysaccharides, Bacterial/*chemistry, Proteobacteria/*chemistry, Species Specificity | Phylogeny | |
| Phylogeny | 15653892 | Marinomonas ushuaiensis sp. nov., isolated from coastal sea water in Ushuaia, Argentina, sub-Antarctica. | Prabagaran SR, Suresh K, Manorama R, Delille D, Shivaji S | Int J Syst Evol Microbiol | 2005 | Antarctic Regions, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Oceanospirillaceae/chemistry/*classification/genetics/*isolation & purification, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA | Genetics | 10.1099/ijs.0.63363-0 |
| Enzymology | 16119460 | [The structure of uncommon lipid A from the marine bacterium Marinomonas communis ATCC 27118T]. | Vorob'eva EV, Dmitrenok AS, Dmitrenok PS, Isakov VV, Krasikova IN, Solov'eva TF | Bioorg Khim | 2005 | Chromatography, Gel, Lipid A/*chemistry/isolation & purification, Magnetic Resonance Spectroscopy, Molecular Structure, Oceanospirillaceae/*chemistry, Spectrometry, Mass, Fast Atom Bombardment | Phylogeny | |
| Pathogenicity | 16903830 | Influence of lipopolysaccharides and lipids A from some marine bacteria on spontaneous and Escherichia coli LPS-induced TNF-alpha release from peripheral human blood cells. | Vorobeva EV, Krasikova IN, Solov'eva TF | Biochemistry (Mosc) | 2006 | Animals, Dose-Response Relationship, Drug, Endotoxins/antagonists & inhibitors, Enzyme-Linked Immunosorbent Assay, Escherichia coli/cytology/metabolism, Gram-Negative Bacteria/cytology/*metabolism, Humans, Leukocytes, Mononuclear/drug effects/*immunology, Lipid A/chemistry/*pharmacology/toxicity, Lipopolysaccharides/antagonists & inhibitors/*pharmacology/toxicity, Mice, Tumor Necrosis Factor-alpha/*metabolism | Metabolism | 10.1134/s000629790607008x |
| Phylogeny | 19060051 | Marinomonas basaltis sp. nov., a marine bacterium isolated from black sand. | Chang HW, Roh SW, Kim KH, Nam YD, Yoon JH, Oh HM, Bae JW | Int J Syst Evol Microbiol | 2008 | Fatty Acids/analysis, Marine Biology, Marinomonas/chemistry/*classification/genetics/*physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Silicon Dioxide, Species Specificity | Genetics | 10.1099/ijs.0.65724-0 |
| Phylogeny | 30648946 | Marinomonas piezotolerans sp. nov., isolated from deep-sea sediment of the Yap Trench, Pacific Ocean. | Yu L, Zhou Z, Wei S, Xu X, Wang Q, Xu G, Tang X, Yang Q | Int J Syst Evol Microbiol | 2019 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Marinomonas/*classification/isolation & purification, Nucleic Acid Hybridization, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Seawater/*microbiology, Sequence Analysis, DNA, Temperature, Ubiquinone/chemistry | Transcriptome | 10.1099/ijsem.0.003227 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2251 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5604) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5604 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 46414 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 16012) | https://www.ccug.se/strain?id=16012 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 80501 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID390.1 | StrainInfo: A central database for resolving microbial strain identifiers |