Name: Nocardioides dilutus DSM 19318
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11134

Type strain:

Species: Nocardioides dilutus

Culture col. no.: DSM 19318, KCTC 19288, MSL 11, JCM 31491

Strain history: <- CJ Kim, KRIBB

NCBI tax ID(s): 433652 (species)

SI-ID 401771

DSM 19318

Section

Nocardioides dilutus DSM 19318 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from farming field.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides dilutus**
	Full Scientific Name (LPSN)	Nocardioides dilutus corrig. Dastager et al. 2009

Synonym

Nocardioides dilutes

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8033]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8033]

Culture medium growth

[Ref.: #8033]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8033]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8033]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #8033]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8033]	Sample type/isolated from	farming field
[Ref.: #8033]	Geographic location (country and/or sea, region)	Bikeum island
[Ref.: #8033]	Country	Republic of Korea
[Ref.: #8033]	Country ISO 3 Code	KOR
[Ref.: #8033]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bigeum Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From farming field
[Ref.: #67771]	Geographic location (country and/or sea, region)	Bikeum island
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Agriculture

#Field

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF466121 (>99% sequence identity) for Nocardioides dilutus from Microbeatlas

Aquatic Samples	588
Soil Samples	3359
Animal Samples	732
Plant Samples	962
Total Samples	5641

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8033]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8033]	Nocardioides dilutus strain MSL-11 16S ribosomal RNA gene, partial sequence	EF466121	1418	ENA	433652 tax ID

[Ref.: #8033]	GC-content	71.8 mol%
[Ref.: #67770]	GC-content	71.8 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #8033]

Culture collection no.

DSM 19318, KCTC 19288, MSL 11, JCM 31491

[Ref.: #80383]

SI-ID 401771

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides dilutes sp. nov. isolated from soil in Bigeum Island, Korea.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Curr Microbiol	10.1007/s00284-008-9125-9	2008	*

References

#8033

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19318

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80383

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401771.1 )

* These data were automatically processed and therefore are not curated

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