Strain identifier
BacDive ID: 11134
Type strain: 
Species: Nocardioides dilutus
Strain history: <- CJ Kim, KRIBB
NCBI tax ID(s): 433652 (species)
version 8.1 (current version)
General
@ref: 8033
BacDive-ID: 11134
DSM-Number: 19318
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Nocardioides dilutus DSM 19318 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from farming field.
NCBI tax id
- NCBI tax id: 433652
- Matching level: species
strain history
| @ref | history |
|---|---|
| 8033 | <- C.-J. Kim <- Y.-J. Ju; MSL-11 |
| 67770 | KCTC 19288 <-- C.-J. Kim; KRIBB, South Korea; MSL-11. |
| 67771 | <- CJ Kim, KRIBB |
doi: 10.13145/bacdive11134.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides dilutus
- full scientific name: Nocardioides dilutus corrig. Dastager et al. 2009
synonyms
- @ref: 20215
- synonym: Nocardioides dilutes
@ref: 8033
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides dilutus
full scientific name: Nocardioides dilutus Dastager et al. 2009
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture medium
- @ref: 8033
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8033 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 8033 | farming field | Bikeum island | Republic of Korea | KOR | Asia |
| 67770 | Soil | Bigeum Island | Republic of Korea | KOR | Asia |
| 67771 | From farming field | Bikeum island | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Engineered
- Cat2: #Agriculture
- Cat3: #Field
taxonmaps
- @ref: 69479
- File name: preview.99_55649.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_24809;97_31058;98_39744;99_55649&stattab=map
- Last taxonomy: Nocardioides dilutus
- 16S sequence: EF466121
- Sequence Identity:
- Total samples: 5641
- soil counts: 3359
- aquatic counts: 588
- animal counts: 732
- plant counts: 962
Safety information
risk assessment
- @ref: 8033
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8033
- description: Nocardioides dilutus strain MSL-11 16S ribosomal RNA gene, partial sequence
- accession: EF466121
- length: 1418
- database: ena
- NCBI tax ID: 433652
GC content
| @ref | GC-content | method |
|---|---|---|
| 8033 | 71.8 | |
| 67770 | 71.8 | high performance liquid chromatography (HPLC) |
External links
@ref: 8033
culture collection no.: DSM 19318, KCTC 19288, MSL 11, JCM 31491
straininfo link
- @ref: 80383
- straininfo: 401771
literature
- topic: Phylogeny
- Pubmed-ID: 18363057
- title: Nocardioides dilutes sp. nov. isolated from soil in Bigeum Island, Korea.
- authors: Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ
- journal: Curr Microbiol
- DOI: 10.1007/s00284-008-9125-9
- year: 2008
- mesh: Actinomycetales/chemistry/*classification/genetics/*isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis/metabolism, Korea, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 8033 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19318) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19318 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 80383 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401771.1 | StrainInfo: A central database for resolving microbial strain identifiers |