Rhodococcus rhodochrous 372, KMRh | Type strain | DSM 43241, ATCC 13808, CIP 104376, IMET 7374, KCC A-0202, NCIB 11147, NCTC 10210, CCUG 47165, NRRL B-16536, JCM 3202, BCRC 16333, CECT 5749, CGMCC 1.2348, CGMCC 4.1815, HAMBI 1959, IAM 15167, IFM 0163, IFO 16069, KCTC 9086, LMG 5365, MTCC 265, NBRC 16069, NCIMB 11147, NRRL B-2149, VKM Ac-1227, VKM Ac-1338 | BacDiveID:10908

Strain identifier

BacDive ID: 10908

Type strain:

Species: Rhodococcus rhodochrous

Strain Designation: 372, KMRh

Culture col. no.: DSM 43241, ATCC 13808, CIP 104376, IMET 7374, KCC A-0202, NCIB 11147, NCTC 10210, CCUG 47165, NRRL B-16536, JCM 3202, BCRC 16333, CECT 5749, CGMCC 1.2348, CGMCC 4.1815, HAMBI 1959, IAM 15167, IFM 0163, IFO 16069, KCTC 9086, LMG 5365, MTCC 265, NBRC 16069, NCIMB 11147, NRRL B-2149, VKM Ac-1227, VKM Ac-1338

Strain history: CIP <- 1995, DSM <- NCTC, Mycobacterium rhodochrous <- R.E. Gordon: strain 372 <- R.S. Breed: strain KMRh, Rhodococcus rhodochrous <- Kràl Collection <- W. Migula <- Zopf

NCBI tax ID(s): 1219024 (strain), 1829 (species)

SI-ID 4886

LMG 5365, ATCC 13808, DSM 43241, IMET 7374, JCM 3202, NCIB 11147, NCTC 10210, NRRL B-16536, CIP 104376, NCIMB 11147, NRRL B-2149, VKM Ac-1227, IFO 16069, VKM Ac-1338, IMET 7344, KCTC 9086, CCUG 47165, NBRC 16069, CECT 5749, HAMBI 1959, BCRC 16333, CCRC 16333, IAM 15167, CGMCC 1.2348, CGMCC 4.1815, CGMCC 4.1147

Special Collections

Rhodococcus phage N18

Other strains from Rhodococcus rhodochrous

Section

Rhodococcus rhodochrous 372 is an aerobe, Gram-positive, oval-shaped human pathogen.

Gram-positive
oval-shaped
aerobe
human pathogen
16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Species	**Rhodococcus rhodochrous**
	Full Scientific Name (LPSN)	Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974 (Approved Lists 1980)

	Synonym	"Staphylococcus* rhodochrous"*
	Synonym	Rhodococcus roseus

Information on morphological and physiological properties Morphology

[Ref.: #122225]	Gram stain	positive

[Ref.: #122225]	Cell shape	oval-shaped

[Ref.: #122225]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.5

[Ref.: #19560]	Colony color	Orange red
[Ref.: #19560]	Incubation period	10-14 days
[Ref.: #19560]	Cultivation medium used	ISP 2

[Ref.: #19560]	Colony color	Rose
[Ref.: #19560]	Incubation period	10-14 days
[Ref.: #19560]	Cultivation medium used	ISP 3

[Ref.: #19560]	Colony color	Rose
[Ref.: #19560]	Incubation period	10-14 days
[Ref.: #19560]	Cultivation medium used	ISP 4

[Ref.: #19560]	Colony color	Beige
[Ref.: #19560]	Incubation period	10-14 days
[Ref.: #19560]	Cultivation medium used	ISP 5

[Ref.: #19560]	Colony color	Beige
[Ref.: #19560]	Incubation period	10-14 days
[Ref.: #19560]	Cultivation medium used	ISP 6

[Ref.: #19560]	Colony color	Rose
[Ref.: #19560]	Incubation period	10-14 days
[Ref.: #19560]	Cultivation medium used	ISP 7

[Ref.: #19560]	Multicellular complex forming ability	no
[Ref.: #19560]	Medium Name (multicellularity)	ISP 2

[Ref.: #19560]	Multicellular complex forming ability	no
[Ref.: #19560]	Medium Name (multicellularity)	ISP 3

[Ref.: #19560]	Multicellular complex forming ability	no
[Ref.: #19560]	Medium Name (multicellularity)	ISP 4

[Ref.: #19560]	Multicellular complex forming ability	no
[Ref.: #19560]	Medium Name (multicellularity)	ISP 5

[Ref.: #19560]	Multicellular complex forming ability	no
[Ref.: #19560]	Medium Name (multicellularity)	ISP 6

[Ref.: #19560]	Multicellular complex forming ability	no
[Ref.: #19560]	Medium Name (multicellularity)	ISP 7

Multimedia content

Caption:

Medium 535 28°C

Intellectual property rights:

© Leibniz-Institut DSMZ

Information on culture and growth conditions Culture and growth conditions

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

ISP 2

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 3

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 4

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 5

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 6

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ISP 7

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

MEDIUM 29- Brain heart agar

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #122225]

Culture medium

CIP Medium 29

[Ref.: #122225]

Culture medium growth

[Ref.: #122225]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #10897]			growth	28 °C
[Ref.: #19560]			optimum	30 °C
[Ref.: #41148]			growth	30 °C
[Ref.: #57548]			growth	20-30 °C
[Ref.: #67770]			growth	28 °C
[Ref.: #122225]			growth	25-45 °C
[Ref.: #122225]		no	growth	10 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57548]	Oxygen tolerance	aerobe
[Ref.: #122225]	Oxygen tolerance	obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #122225]		NaCl		growth	0-8	%
[Ref.: #122225]		NaCl	no	growth	10	%

Observation

quinones: MK-8(H₂)

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]		adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #19560]		arabinose ChEBI	-
[Ref.: #68369]		arginine ChEBI	-	hydrolysis	* from API 20NE, API 20E
[Ref.: #19560]		cellulose ChEBI	-
[Ref.: #68368]		citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68369]		D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]		D-glucose ChEBI	-	fermentation	* from API 20NE, API Coryne
[Ref.: #68369]		D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68379]		D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68369]		decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #122225]		esculin ChEBI	-	hydrolysis
[Ref.: #68369]		esculin ChEBI	+	hydrolysis	* from API 20NE, API Coryne
[Ref.: #19560]		fructose ChEBI	+
[Ref.: #68369]		gelatin ChEBI	-	hydrolysis	* from API 20NE, API 20E, API Coryne
[Ref.: #19560]		glucose ChEBI	+
[Ref.: #68379]		glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]		lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68369]		malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]		maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68379]		maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #19560]		mannitol ChEBI	+
[Ref.: #19560]		myo-inositol ChEBI	-
[Ref.: #122225]		nitrate ChEBI	+	reduction
[Ref.: #122225]		nitrate ChEBI	-	respiration
[Ref.: #68369]		nitrate ChEBI	+	reduction	* from API 20NE, API Coryne
[Ref.: #122225]		nitrite ChEBI	-	reduction
[Ref.: #68368]		ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19560]		raffinose ChEBI	-
[Ref.: #19560]		rhamnose ChEBI	-
[Ref.: #19560]		sucrose ChEBI	-
[Ref.: #68379]		sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68369]		tryptophan ChEBI	-	energy source	* from API 20NE, API 20E
[Ref.: #68369]		urea ChEBI	-	hydrolysis	* from API 20NE, API 20E, API Coryne
[Ref.: #19560]		xylose ChEBI	-
		Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122225]		indole ChEBI	no
[Ref.: #68368]		acetoin ChEBI	no	* from API 20E
[Ref.: #68368]		hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68369]		indole ChEBI	no	* from API 20NE, API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #122225]		acetoin ChEBI	-
[Ref.: #122225]		glucose ChEBI		-
[Ref.: #68368]		acetoin ChEBI	-			* from API 20E
[Ref.: #68369]		indole ChEBI			-	* from API 20NE, API 20E

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #122225]		alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68379]		alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]		alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122225]		amylase	-
[Ref.: #68369]		arginine dihydrolase	-	3.5.3.6	* from API 20NE, API 20E
[Ref.: #122225]		beta-galactosidase	-	3.2.1.23
[Ref.: #68379]		beta-galactosidase	-	3.2.1.23	* from API Coryne, API 20E, API zym
[Ref.: #68379]		beta-glucosidase	+	3.2.1.21	* from API Coryne, API 20NE, API zym
[Ref.: #68379]		beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #122225]		caseinase	-	3.4.21.50
[Ref.: #122225]		catalase	+	1.11.1.6
[Ref.: #68379]		catalase	+	1.11.1.6	* from API Coryne
[Ref.: #122225]		DNase	-
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #122225]		gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122225]		gelatinase	-
[Ref.: #68379]		gelatinase	-		* from API Coryne, API 20NE, API 20E
[Ref.: #122225]		lecithinase	-
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122225]		lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]		lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68379]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #122225]		ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]		ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #122225]		oxidase	-
[Ref.: #122225]		phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68379]		pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]		pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #122225]		tryptophan deaminase	-
[Ref.: #68368]		tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #122225]		tween esterase	-
[Ref.: #122225]		urease	-	3.5.1.5
[Ref.: #68379]		urease	-	3.5.1.5	* from API Coryne, API 20NE, API 20E
		Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

Fatty acid	Percentage	ECL
C16:0	36.2	16
C16:1 ω7c/C15:0 ISO 2OH	14.2	15.85
C16:1 ω7c	10.9	15.819
C18:1 ω9c	10.8	17.769
TBSA 10Me18:0	10.2	18.392
C16:0 10-methyl	4.5	16.433
C18:2 ω6,9c/C18:0 ANTE	4.2	17.724
C14:0	2.3	14
C18:0	2	18
C20:0	1.3	20
C17:0	1.1	17
C19:0	0.7	19
C15:0	0.7	15
C16:1 ω9c	0.4	15.774
C17:0 10-methyl	0.4	17.41

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19560]	412	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #10897]	24870	+	-	-	-	-	+	-	-	+	+/-	+/-	+	+/-	-	+/-	-	+	+	+	+/-	not determinedn.d.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122225]	648	not determinedn.d.	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	+	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #57548]	1575	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #57548]	1975	-	-	+	+	+	+	-	-	-	-	+	+	-	-	-	+	+	-	-	-
[Ref.: #10897]	14187	-	+/-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-
[Ref.: #122225]	7917	-	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

Global distribution of 16S sequence X81936 (>99% sequence identity) for Rhodococcus from Microbeatlas

Aquatic Samples	660
Soil Samples	1489
Animal Samples	1166
Plant Samples	195
Total Samples	3510

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10897]	Pathogenicity (human)	yes, in single cases
[Ref.: #10897]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19560]	Biosafety level	1	Risk group (German classification)
[Ref.: #122225]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	R.rhodochrous 16S rRNA gene (CIP 1759.88T)	X81936	1320	GenBank ENA	1829 tax ID
[Ref.: #20218]	Rhodococcus erythropolis strain ATCC 13808 16S ribosomal RNA gene, partial sequence	AY281106	971	GenBank ENA	1833 tax ID	*
[Ref.: #20218]	Rhodococcus rhodochrous strain ATCC 13808 16S ribosomal RNA gene, partial sequence	GQ871830	609	GenBank ENA	1829 tax ID	*
[Ref.: #20218]	Rhodococcus rhodochrous strain DSM 43241 16S ribosomal RNA gene, partial sequence	FJ468342	1444	GenBank ENA	1829 tax ID	*
[Ref.: #20218]	Rhodococcus rhodochrous strain DSM 43241 16S ribosomal RNA gene, partial sequence	KF410366	1375	GenBank ENA	1829 tax ID	*
[Ref.: #20218]	R.rhodochrous (DSM 43241) 16S rRNA gene	X79288	1474	GenBank ENA	1829 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodococcus rhodochrous NBRC 16069	GCA_001047055	contig	GenBank ENA	1219024 tax ID
[Ref.: #67770]	Rhodococcus rhodochrous DSM 43241	GCA_001646825	scaffold	GenBank ENA	1829 tax ID
[Ref.: #66792]	Rhodococcus rhodochrous strain DSM 43241	1829.21	wgs	PATRIC	1829 tax ID	*
[Ref.: #66792]	Rhodococcus rhodochrous strain NCTC10210	1829.30	complete	PATRIC	1829 tax ID	*
[Ref.: #66792]	Rhodococcus rhodochrous NBRC 16069	2630968521	draft	JGI IMG/M	1219024 tax ID	*
[Ref.: #66792]	Rhodococcus rhodochrous NCTC 10210	2826464033	complete	JGI IMG/M	1829 tax ID	*

[Ref.: #67770]	GC-content	69.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	62 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	68.2 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	68.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodococcus rhodochrous NCTC10210 NCBI: GCA_900187265.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	87	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodococcus rhodochrous NCTC10210 NCBI: GCA_900187265.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.892	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.969	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.485	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	55.268	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.9	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	no

Availability in culture collections External links

Culture collection no.

DSM 43241, ATCC 13808, CIP 104376, IMET 7374, KCC A-0202, NCIB 11147, NCTC 10210, CCUG 47165, NRRL B-16536, JCM 3202, BCRC 16333, CECT 5749, CGMCC 1.2348, CGMCC 4.1815, HAMBI 1959, IAM 15167, IFM 0163, IFO 16069, KCTC 9086, LMG 5365, MTCC 265, NBRC 16069, NCIMB 11147, NRRL B-2149, VKM Ac-1227, VKM Ac-1338

SI-ID 4886

*


[Ref.: #124042]	Rhodococcus phage N18

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodococcus lactis sp. nov., an actinobacterium isolated from sludge of a dairy waste treatment plant.	Singh PK, Kumari A, Chawla N, Pinnaka AK, Korpole S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000565	2015	*
Phylogeny	Rhodococcus artemisiae sp. nov., an endophytic actinobacterium isolated from the pharmaceutical plant Artemisia annua L.	Zhao GZ, Li J, Zhu WY, Tian SZ, Zhao LX, Yang LL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.031930-0	2011	*
Phylogeny	Rhodococcus yananensis sp. nov., a novel denitrification actinobacterium isolated from microbial fermentation bed material from a pig farm.	Jiang Y, Zheng C, Yu T, Li J, Ai J, Li M, Liu X, Deng Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.005426	2022	*

References

#10897

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43241

#19560

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41148 ; Curators of the CIP;
#57548 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47165

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68369

Automatically annotated from API 20NE .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80162

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4886.1 )

#122225 Collection of Institut Pasteur ; Curators of the CIP; CIP 104376

#124042

Dr. Johannes Wittmann, Dr. Clara Rolland, Dr. Lorenz Reimer, Joaquim Sardà: PhageDive .

* These data were automatically processed and therefore are not curated

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