Rhodococcus rhodochrous (DSM 43240, NCTC 8139, CIP 104649)

Name: Rhodococcus rhodochrous (DSM 43240, NCTC 8139, CIP 104649)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10560

Type strain

Culture col. no. DSM 43240 NCTC 8139 CIP 104649

NCBI tax ID(s) 1829

Special Collections DSMZ CIP

History <- NCTC (Mycobacterium rhodochrous) <- G. Penso (Mycobacterium sp.) CIP <- 1995, NCTC <- Grassberger <- G. Penso, Mycobacterium pellegrino

Links

Rhodococcus rhodochrous DSM 43240 is a mesophilic prokaryote of the family Nocardiaceae.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 50220

CIP 104649,NCTC 8139,DSM 43240

@ref 20215

Last LPSN update 2025-12-16 09:49:22

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Rhodococcus

Species Rhodococcus rhodochrous

Full scientific name Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974 (Approved Lists 1980)

Synonyms (2)

"Staphylococcus rhodochrous"
Rhodococcus roseus

BacDive ID	Other strains from **Rhodococcus rhodochrous** (27)	Type strain
10908	R. rhodochrous 372, KMRh, DSM 43241, ATCC 13808, CIP 104376, ... (type strain)
10844	R. rhodochrous N814, DSM 43969
10875	R. rhodochrous N56, DSM 43956
10897	R. rhodochrous DSM 363, ATCC 4276, DSM 43202, JCM 20420, ...
10898	R. rhodochrous An117, DSM 6263, IMET 7497
10900	R. rhodochrous S5, DSM 6697
10901	R. rhodochrous OR, DSM 11097
10904	R. rhodochrous DSM 43269, ATCC 4273, CBS 197.57, CCM 3245, ...
10905	R. rhodochrous DSM 43198, NCIB 9701, CIP 104622, IMET 7278, ...
10909	R. rhodochrous DSM 43273, ATCC 9356, NRRL B-1306
10910	R. rhodochrous DSM 43274, ATCC 271, JCM 2156, BCRC 13391, ...
10913	R. rhodochrous N31 R312, W 21, DSM 43334
10916	R. rhodochrous N 1030, DSM 43986, IMV 347
10917	R. rhodochrous N27H, DSM 46022, CCM 278, IMET 7285, NCIB ...
10918	R. rhodochrous Gdf N31, Gordon W21, N31, Overbeck, DSM 46023, ...
10919	R. rhodochrous 40019, Breed He-11, Gdf R10, DSM 46044, ATCC ...
103565	R. rhodochrous STH00245(ZIMET), I-449, HKI 0245
131010	R. rhodochrous PY11, DSM 101666
131917	R. rhodochrous RPK 1, DSM 103064
136316	R. rhodochrous CIP 104635, PCM 909
136329	R. rhodochrous N454, CIP 104638, PCM 2216
139137	R. rhodochrous CIP 104496, ATCC 4004, IAM 12127, JCM 2158
139161	R. rhodochrous CIP 82.104, ATCC 184, NCTC 2682, NCTC 7510
144204	R. rhodochrous CCUG 23576, ATCC 25721
145853	R. rhodochrous CCUG 29792
163232	R. rhodochrous 1652, JCM 2157, ATCC 999, CIP 104495, IAM ...
169282	R. rhodochrous G38GP, DSM 111905

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.5
125438		92.6
125438	positive	91.954

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10896	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
35714	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
122230	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10896	positive	growth	28	mesophilic
35714	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.3

Isolation, sampling and environmental information

Isolation

@ref	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
35714	Rome	Italy	ITA	Europe
122230	Rome	Italy	ITA	Europe	1950

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10896	1	Risk group (German classification) According to TRBA 466
122230	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	53990_A01 assembly for Gordonia paraffinivorans 3012STDY6756503	contig	GCA_900683595	36822.8	8045961168	36822	76.47

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Gordonia rubripertincta strain 3012STDY6756503
PATRIC: 36822.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	55.30	no
125439	motility	BacteriaNetⓘ	no	85.30	no
125439	gram_stain	BacteriaNetⓘ	positive	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gordonia rubripertincta strain 3012STDY6756503
PATRIC: 36822.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.95	no
125438	anaerobic	anaerobicⓘ	no	97.61	no
125438	spore-forming	spore-formingⓘ	no	62.53	no
125438	aerobic	aerobicⓘ	yes	89.38	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	no	92.60	no

Literature

References

#10896	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43240
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#35714	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#122230	Collection of Institut Pasteur ; Curators of the CIP; CIP 104649
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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