Rhodococcus fascians (DSM 20131, ATCC 12975, CIP 104625)

Name: Rhodococcus fascians (DSM 20131, ATCC 12975, CIP 104625)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10882

Type strain

Strain Designation CF 19, CF 107(505)

Culture col. no. DSM 20131 ATCC 12975 CIP 104625 NCPPB 3836 CF 19 1 more

NCBI tax ID(s) 1828

Special Collections DSMZ CIP

Links

Rhodococcus fascians CF 19 is a mesophilic plant pathogen of the family Nocardiaceae.

mesophilic plant pathogen 16S sequence

Name and taxonomic classification

SI-ID 35706

ATCC 12975,CIP 104625,DSM 20131,NCPPB 3836,BCRC 12130,CCRC 12130,ICMP 2604

@ref 20215

Last LPSN update 2025-12-16 09:49:26

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Rhodococcus

Species Rhodococcus fascians

Full scientific name Rhodococcus fascians (Tilford 1936) Goodfellow 1984

Synonyms (4)

Rhodococcoides fascians
Rhodococcus luteus
Corynebacterium fascians
"Phytomonas fascians"

BacDive ID	Other strains from **Rhodococcus fascians** (23)	Type strain
10883	R. fascians DSM 20669, ATCC 12974, CIP 104713, IFO 12155, ... (type strain)
8455	R. fascians TBC 4351/91, DSM 44418
10884	R. fascians 81N-Sch, DSM 43586
10885	R. fascians DSM 43673, ATCC 35014, AUCNM A-594, JCM 6162, ...
10886	R. fascians N 1026, DSM 43985, IMV 29
10887	R. fascians N 1062, DSM 43987
10888	R. fascians VI, DSM 44425
10889	R. fascians B2L3, DSM 44858
10890	R. fascians DSM 45106, BEM 660
10891	R. fascians DSM 46103, CIP 104629, IMET 7762, VKM Ac-868
103559	R. fascians ST033347(HKI),
134414	R. fascians C676, CIP 104669, LMG 3614, NCPPB 2211
136326	R. fascians CIP 104645, IAM 1279, IFO 12077
136327	R. fascians CIP 104643, LMG 3626
137089	R. fascians CIP 104504, IMV 187, JCM 6163, VKM Ac-986
137090	R. fascians CIP 104505, IMV 419, JCM 6164, VKM Ac-991
137274	R. fascians 56/2a, CIP 104670, LMG 3618, NCPPB 2553
137275	R. fascians CIP 104671, LMG 3633
151837	R. fascians CCUG 45011
152269	R. fascians CCUG 46265
152981	R. fascians CCUG 48189
154524	R. fascians CCUG 54217
165353	R. fascians JCM 6165, IMV 27, VKM Ac-1006

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8556	CORYNEBACTERIUM AGAR (DSMZ Medium 53)	Medium recipe at MediaDive	Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
35704	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
119289	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8556	positive	growth	30	mesophilic
35704	positive	growth	30	mesophilic

Physiology and metabolism

Compound production

@ref	Compound
8556	penicillin derivatives
20216	Penicillin derivatives

Murein

@ref	Murein short key	Type
8556	A31	A1gamma m-Dpm-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
8556	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
8556	-	-	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
8556		1	Risk group (German classification) According to TRBA 466
119289		1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Rhodococcus fascians partial 16S rRNA	X53204	1338		1828

Genome-based predictions

Literature

Title	Authors	Journal	DOI	Year
Nucleotide sequence of 5S ribosomal RNA of Rhodococcus fascians.	Luehrsen K, Woese CR, Wolters J, Stackebrandt E.	Nucleic Acids Res	10.1093/nar/17.13.5378	1989
Rapid and sensitive method for the detection of Mycobacterium chlorophenolicum PCP-1 in soil based on 16S rRNA gene-targeted PCR.	Briglia M, Eggen RI, de Vos WM, van Elsas JD.	Appl Environ Microbiol	10.1128/aem.62.4.1478-1480.1996	1996
Compilation of 5S rRNA and 5S rRNA gene sequences.	Specht T, Wolters J, Erdmann VA.	Nucleic Acids Res	10.1093/nar/18.suppl.2215	1990
Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Insertion sequences.	Mahillon J, Chandler M.	Microbiol Mol Biol Rev	10.1128/mmbr.62.3.725-774.1998	1998
Multiplex recombinase polymerase amplification assay developed using unique genomic regions for rapid on-site detection of genus Clavibacter and C. nebraskensis.	Larrea-Sarmiento A, Stack JP, Alvarez AM, Arif M.	Sci Rep	10.1038/s41598-021-91336-7	2021

References

#8556	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20131
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#35704	; Curators of the CIP;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#119289	Collection of Institut Pasteur ; Curators of the CIP; CIP 104625
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhodococcus fascians (DSM 20131, ATCC 12975, CIP 104625)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Compound production

Murein

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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