Name: Rhodococcus fascians DSM 43673
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10885

Type strain:

Species: Rhodococcus fascians

Culture col. no.: DSM 43673, ATCC 35014, AUCNM A-594, JCM 6162, VKM Ac-594, IMV 385, CIP 104187, IFO 15528, LMG 5360, NBRC 15528, NCIMB 11743, NRRL B-16939

Strain history: CIP <- 1994, JCM, Rhodococcus luteus <- VKM <- N. Agre: strain IMV 385 <- O.A. Nesterenko

NCBI tax ID(s): 1828 (species)

SI-ID 4880

LMG 5360, ATCC 35014, NCIB 11743, DSM 43673, CIP 104187, IFO 15528, JCM 6162, NCIMB 11743, VKM Ac-594, NRRL B-16939, IMET 7761, NBRC 15528

Other strains from Rhodococcus fascians

R. fascians DSM 20669, ATCC 12974, CIP 104713, ... (type strain)
R. fascians TBC 4351/91, DSM 44418
R. fascians CF 19, CF 107(505), DSM 20131, ...
R. fascians 81N-Sch, DSM 43586
R. fascians N 1026, DSM 43985, IMV 29
R. fascians N 1062, DSM 43987
R. fascians VI, DSM 44425
R. fascians B2L3, DSM 44858
R. fascians DSM 45106, BEM 660
R. fascians DSM 46103, CIP 104629, IMET 7762, ...
R. fascians ST033347(HKI),
R. fascians C676, CIP 104669, LMG 3614, NCPPB ...
R. fascians CIP 104645, IAM 1279, IFO 12077
R. fascians CIP 104643, LMG 3626
R. fascians CIP 104504, IMV 187, JCM 6163, ...
R. fascians CIP 104505, IMV 419, JCM 6164, ...
R. fascians 56/2a, CIP 104670, LMG 3618, NCPPB ...
R. fascians CIP 104671, LMG 3633
R. fascians CCUG 45011
R. fascians CCUG 46265
R. fascians CCUG 48189
R. fascians CCUG 54217
R. fascians JCM 6165, IMV 27, VKM Ac-1006

Section

Rhodococcus fascians DSM 43673 is an obligate aerobe, mesophilic, Gram-positive plant pathogen that was isolated from soil.

Gram-positive
rod-shaped
mesophilic
obligate aerobe
plant pathogen
16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Species	**Rhodococcus fascians**
	Full Scientific Name (LPSN)	Rhodococcus fascians (Tilford 1936) Goodfellow 1984

	Synonym	Corynebacterium fascians
	Synonym	"Rhodococcoides* fascians"*
	Synonym	"Phytomonas* fascians"*
	Synonym	Rhodococcus luteus

Information on morphological and physiological properties Morphology

[Ref.: #119288]	Gram stain	positive

[Ref.: #119288]	Cell shape	rod-shaped

[Ref.: #119288]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11236]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11236]

Culture medium growth

[Ref.: #11236]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11236]

Culture medium composition

expand / minimize

[Ref.: #35632]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #35632]

Culture medium growth

[Ref.: #35632]

Culture medium composition

expand / minimize

[Ref.: #119288]

Culture medium

CIP Medium 72

[Ref.: #119288]

Culture medium growth

[Ref.: #119288]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #11236]	growth	28 °C
[Ref.: #35632]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #11236]	Temperature range	mesophilic
[Ref.: #35632]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119288]

Oxygen tolerance

obligate aerobe

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119288]		nitrate ChEBI	-	reduction
[Ref.: #119288]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119288]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119288]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119288]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119288]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119288]	7832	-	+	-	+	-	+	+	+	+	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11236]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil

[Ref.: #119288]	Sample type/isolated from	Environment, Soil
[Ref.: #119288]	Country	Ukraine
[Ref.: #119288]	Country ISO 3 Code	UKR
[Ref.: #119288]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X79187 (>99% sequence identity) for Rhodococcus fascians from Microbeatlas

Aquatic Samples	1939
Soil Samples	894
Animal Samples	3728
Plant Samples	436
Total Samples	6997

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11236]	Pathogenicity (plant)	yes
[Ref.: #11236]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119288]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	R.fascians 16S rRNA gene (ATCC 35014T)	X81932	1316	ENA	1828 tax ID	*
[Ref.: #20218]	R.luteus (DSM 43673) 16S rRNA gene	X79187	1467	ENA	1828 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodococcus luteus DSM 43673	2926799693	draft	JGI IMG/M	1828 tax ID	*

[Ref.: #67770]

GC-content

64.1 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #11236]

Culture collection no.

DSM 43673, ATCC 35014, AUCNM A-594, JCM 6162, VKM Ac-594, IMV 385, CIP 104187, IFO 15528, LMG 5360, NBRC 15528, NCIMB 11743, NRRL B-16939

[Ref.: #80140]

SI-ID 4880

References

#11236

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43673

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35632 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80140

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4880.1 )

#119288 Collection of Institut Pasteur ; Curators of the CIP; CIP 104187
* These data were automatically processed and therefore are not curated

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