Rhodococcus fascians DSM 43673 is an obligate aerobe, mesophilic, Gram-positive plant pathogen that was isolated from soil.
Gram-positive rod-shaped obligate aerobe mesophilic plant pathogen genome sequence 16S sequence
SI-ID 4880
| @ref 20215 |
Last LPSN update
2025-12-16 09:49:26 |
| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Nocardiaceae |
| Genus Rhodococcus |
| Species Rhodococcus fascians |
| Full scientific name Rhodococcus fascians (Tilford 1936) Goodfellow 1984 |
| Synonyms (4) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11236 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive  | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 35632 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 119288 | CIP Medium 72 | Medium recipe at CIP |
| 67770 | Observationquinones: MK-8(H2) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 119288 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119288 | oxidase | - | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 119288 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
Global distribution of 16S sequence X79187 (>99% sequence identity) for Rhodococcus fascians from Microbeatlas 
 Aquatic Samples |
1939 |
 Soil Samples |
894 |
 Animal Samples |
3728 |
 Plant Samples |
436 |
| Total Samples | 6997 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM3081381v1 assembly for Rhodococcoides fascians DSM 43673 | contig | GCA_030813815   | 1828.63  | 2926799693  | 1828 | 78.47 | |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 64.1 | thermal denaturation, midpoint method (Tm) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| The Cytokinin Complex Associated With Rhodococcus fascians: Which Compounds Are Critical for Virulence? | Jameson PE, Dhandapani P, Song J, Zatloukal M, Strnad M, Remus-Emsermann MNP, Schlechter RO, Novak O. | Front Plant Sci | 10.3389/fpls.2019.00674 | 2019 | | |
| Enzymology | Identification of a new class of cytochrome P450 from a Rhodococcus sp. | Roberts GA, Grogan G, Greter A, Flitsch SL, Turner NJ. | J Bacteriol | 10.1128/jb.184.14.3898-3908.2002 | 2002 | |
| Metabolism | Cloning of the genes for degradation of the herbicides EPTC (S-ethyl dipropylthiocarbamate) and atrazine from Rhodococcus sp. strain TE1. | Shao ZQ, Behki R. | Appl Environ Microbiol | 10.1128/aem.61.5.2061-2065.1995 | 1995 | |
| Electroactive biofilms from activated sludge: Mechanistic insights into electron transport on nanostructured electrodes for the development of biosensors and microbial fuel cell devices. | Perchikov R, Cheliukanov M, Kadison K, Belousova T, Provotorova D, Mylnikov P, Shchulkin A, Arlyapov V, Ananikov VP. | Biosens Bioelectron | 10.1016/j.bios.2025.118195 | 2026 | | |
| Chemical Profile and Biological Activity of the Hymenochaetoid Mushroom Hirschioporus fuscoviolaceus (Agaricomycetes). | Suratno S, Varnai B, Felegyi-Toth CA, Papp V, Boldizsar I, Gati T, Moricz AM, Beni S, Vanyolos A. | Int J Med Mushrooms | 10.1615/intjmedmushrooms.2025059003 | 2025 | | |
| Transmission and Management of Pathogenic Agrobacterium tumefaciens and Rhodococcus fascians in Select Ornamentals. | Gordon MI, Thomas WJ, Putnam ML. | Plant Dis | 10.1094/pdis-11-22-2557-re | 2024 | | |
| The C-terminal stretch of glycine-rich proline-rich protein (SbGPRP1) from Sorghum bicolor serves as an antimicrobial peptide by targeting the bacterial outer membrane protein. | Roy S, Agarwal T, Das A, Halder T, Upadhyaya G, Chaubey B, Ray S. | Plant Mol Biol | 10.1007/s11103-022-01317-1 | 2023 | | |
| The dispersal of microbes among and within flowers by butterflies | Olson MM, Ravikanthachari N, Blackwell M, Boggs CL. | Ecol Entomol | 2023 | | ||
| Assessing the effect of temperature on Rhodococcus metabolite production. | Macias-Contreras MI, Millan-Aguinaga N, Parra J, Duncan KR. | Microbiology (Reading) | 10.1099/mic.0.001598 | 2025 | | |
| Qualitative Assessment of Microalgae-Bacteria Biofilm Development on K5 Carriers: Photoheterotrophic Growth in Wastewater. | Sousa H, Kinney KA, Sousa CA, Simoes M. | Microorganisms | 10.3390/microorganisms13051060 | 2025 | | |
| Identification of the lydiamycin biosynthetic gene cluster in a plant pathogen guides structural revision and identification of molecular target. | Ford JJ, Santos-Aberturas J, Hems ES, Sallmen JW, Bogeholz LAK, Polturak G, Osbourn A, Wright JA, Rodnina MV, Vereecke D, Francis IM, Truman AW. | Proc Natl Acad Sci U S A | 10.1073/pnas.2424388122 | 2025 | | |
| Bioassay-Guided Isolation of cis-Clerodane Diterpenoids and Monoglycerides from the Leaves of Solidago gigantea and Their Antimicrobial Activities. | Baglyas M, Ott PG, Bozso Z, Schwarczinger I, Bakonyi J, Dlauchy D, Darcsi A, Varga S, Moricz AM. | Plants (Basel) | 10.3390/plants14142152 | 2025 | | |
| Phylogeny | Generalization of Classification of AlkB Family Alkane Monooxygenases from Rhodococcus (sensu lato) Group Based on Phylogenetic Analysis and Genomic Context Comparison. | Petrikov KV, Vetrova AA, Ivanova AA, Sazonova OI, Pozdnyakova-Filatova IY. | Int J Mol Sci | 10.3390/ijms26041713 | 2025 | |
| Removal of parabens from wastewater by Chlorella vulgaris-bacteria co-cultures. | Sousa H, Sousa CA, Vale F, Santos L, Simoes M. | Sci Total Environ | 10.1016/j.scitotenv.2023.163746 | 2023 | | |
| Phylogeny | Discovery of Undescribed Clerodane Diterpenoids with Antimicrobial Activity Isolated from the Roots of Solidago gigantea Ait. | Baglyas M, Bozso Z, Schwarczinger I, Ott PG, Bakonyi J, Darcsi A, Moricz AM. | Int J Mol Sci | 10.3390/ijms26189187 | 2025 | |
| High-performance thin-layer chromatography - antibacterial assay first reveals bioactive clerodane diterpenes in giant goldenrod (Solidago gigantea Ait.). | Baglyas M, Ott PG, Garadi Z, Glavnik V, Beni S, Vovk I, Moricz AM. | J Chromatogr A | 10.1016/j.chroma.2022.463308 | 2022 | | |
| Nine-dimensional bioprofiles of Tunisian sages (Salvia officinalis, S. aegyptiaca and S. verbenaca) by high-performance thin-layer chromatography - effect-directed analyses. | Reguigui A, Ott PG, Darcsi A, Bakonyi J, Romdhane M, Moricz AM. | J Chromatogr A | 10.1016/j.chroma.2022.463704 | 2023 | | |
| Further Characterization of MUAS35SCP and FUAS35SCP Recombinant Promoters and Their Implication in Translational Research. | Sethi L, Sherpa T, Kumari K, Dey N. | Mol Biotechnol | 10.1007/s12033-022-00513-0 | 2022 | | |
| Metagenomic survey reveals hydrocarbon biodegradation potential of Canadian high Arctic beaches. | Gongora E, Lirette AO, Freyria NJ, Greer CW, Whyte LG. | Environ Microbiome | 10.1186/s40793-024-00616-y | 2024 | | |
| Spatial and temporal dynamics of actinobacteria in drinking water reservoirs: Novel insights into abundance, community structure, and co-existence model. | Zhang H, Ma M, Huang T, Miao Y, Li H, Liu K, Yang W, Ma B. | Sci Total Environ | 10.1016/j.scitotenv.2021.152804 | 2022 | | |
| Genetics | Beav: a bacterial genome and mobile element annotation pipeline. | Jung JM, Rahman A, Schiffer AM, Weisberg AJ. | mSphere | 10.1128/msphere.00209-24 | 2024 | |
| Isolation of 2,5-diketopiperazines from Lysobacter capsici AZ78 with activity against Rhodococcus fascians. | Cimmino A, Bejarano A, Masi M, Puopolo G, Evidente A. | Nat Prod Res | 10.1080/14786419.2020.1756803 | 2021 | | |
| Penetration of Triphenylphosphonium Derivatives through the Cell Envelope of Bacteria of Mycobacteriales Order. | Nazarov PA, Majorov KB, Apt AS, Skulachev MV. | Pharmaceuticals (Basel) | 10.3390/ph16050688 | 2023 | | |
| Immobilization of Rhodococcus by encapsulation and entrapment: a green solution to bitter citrus by-products. | Pilar-Izquierdo MC, Lopez-Fouz M, Ortega N, Busto MD. | Appl Microbiol Biotechnol | 10.1007/s00253-023-12724-9 | 2023 | | |
| Phylogeny | Broad-range polymerase chain reaction and sequencing for the diagnosis of infectious diseases. | Putnam NE, Charles DW, Doub JB, Johnson JK. | Microbiol Spectr | 10.1128/spectrum.02505-24 | 2025 | |
| Investigation of the Blood Microbiome in Horses With Fever of Unknown Origin. | Sun Y, Yu YT, Castillo XO, Anderson R, Wang M, Sun Q, Tallmadge R, Sams K, Reboul G, Zehr J, Brown J, Wang X, Marra N, Stanhope B, Grenier J, Pusterla N, Divers T, Mittel L, Goodman LB. | Vet Med Sci | 10.1002/vms3.70272 | 2025 | | |
| Virulent Rhodococcus fascians Produce Unique Methylated Cytokinins. | Jameson PE. | Plants (Basel) | 10.3390/plants8120582 | 2019 | | |
| Genome Sequences of Plant-Associated Rhodococcus sp. Isolates from Tunisia. | Dhaouadi S, Win J, Mougou AH, Harant A, Kamoun S, Rhouma A. | Microbiol Resour Announc | 10.1128/mra.00293-20 | 2020 | | |
| Identification of an atypical replicative genetic element in Rhodococcus jostii RHA1. | Acedos MG, de la Torre I, Barriuso J, Garcia JL. | Front Microbiol | 10.3389/fmicb.2025.1567901 | 2025 | | |
| Metabolism | Desorption and solubilization of anthracene by a rhamnolipid biosurfactant from Rhodococcus fascians. | Kim CH, Lee DW, Heo YM, Lee H, Yoo Y, Kim GH, Kim JJ. | Water Environ Res | 10.1002/wer.1103 | 2019 | |
| Genetics | Mycobacteriales taxonomy using network analysis-aided, context-uniform phylogenomic approach for non-subjective genus demarcation. | Val-Calvo J, Vazquez-Boland JA. | mBio | 10.1128/mbio.02207-23 | 2023 | |
| Metabolism | Glycine rich proline rich protein from Sorghum bicolor serves as an antimicrobial protein implicated in plant defense response. | Halder T, Upadhyaya G, Roy S, Biswas R, Das A, Bagchi A, Agarwal T, Ray S. | Plant Mol Biol | 10.1007/s11103-019-00894-y | 2019 | |
| Pathogenicity | Plants make galls to accommodate foreigners: some are friends, most are foes. | Harris MO, Pitzschke A. | New Phytol | 10.1111/nph.16340 | 2020 | |
| Detection of Rhodococcus fascians, the Causative Agent of Lily Fasciation in South Korea. | Park JM, Koo J, Kang SW, Jo SH, Park JM. | Pathogens | 10.3390/pathogens10020241 | 2021 | | |
| First Report of Bushy Stunt of Japanese Spindle Caused by Rhodococcus spp. in Tunisia | Dhaouadi S, Mougou AH, Gleason ML, Rhouma A, Fichtner EJ. | Plant Dis | 10.1094/pdis-10-19-2066-pdn | 2020 | | |
| Rare distribution of butenolide-type signaling molecules among Streptomyces strains and functional importance as inducing factors for secondary metabolite production in Streptomyces rochei 7434AN4. | Hirata A, Sumiyoshi M, Fujita H, Akimoto M, Padayao MHRA, Eguchi Y, Matsuura M, Otsuka M, Inada K, Teshima A, Arakawa K. | J Antibiot (Tokyo) | 10.1038/s41429-025-00840-9 | 2025 | | |
| Metabolism | Neovascularization during leafy gall formation on Arabidopsis thaliana upon Rhodococcus fascians infection. | Dolzblasz A, Banasiak A, Vereecke D. | Planta | 10.1007/s00425-017-2778-5 | 2018 | |
| Save the crop: Photodynamic Inactivation of plant pathogens I: bacteria. | Glueck M, Hamminger C, Fefer M, Liu J, Plaetzer K. | Photochem Photobiol Sci | 10.1039/c9pp00128j | 2019 | | |
| Antimicrobial activity of cultivated cardoon (Cynara cardunculus L. var. altilis DC.) leaf extracts against bacterial species of agricultural and food interest | Scavo A, Pandino G, Restuccia C, Parafati L, Cirvilleri G, Mauromicale G. | Industrial crops and products. | 10.1016/j.indcrop.2018.12.005 | 2019 | | |
| Calcium carbonate precipitating extremophilic bacteria in an Alpine ice cave. | Lange-Enyedi NT, Nemeth P, Borsodi AK, Spotl C, Makk J. | Sci Rep | 10.1038/s41598-024-53131-y | 2024 | | |
| Xanthomonas campestris utilizes IAA to regulate its viability and virulence by altering the production of BCAAs and ROS. | Li S, Song K, Cui Y, Li L, Zhang M, He YW. | mLife | 10.1002/mlf2.70033 | 2025 | | |
| Genetics | A sustained CYCLINB1;1 and STM expression in the neoplastic tissues induced by Rhodococcus fascians on Arabidopsis underlies the persistence of the leafy gall structure. | Dolzblasz A, Banasiak A, Vereecke D. | Plant Signal Behav | 10.1080/15592324.2020.1816320 | 2020 | |
| Symbiotic bacteria of the gall-inducing mite Fragariocoptes setiger (Eriophyoidea) and phylogenomic resolution of the eriophyoid position among Acari. | Klimov PB, Chetverikov PE, Dodueva IE, Vishnyakov AE, Bolton SJ, Paponova SS, Lutova LA, Tolstikov AV. | Sci Rep | 10.1038/s41598-022-07535-3 | 2022 | | |
| Pathogen-triggered changes in plant development: Virulence strategies or host defense mechanism? | Kong F, Yang L. | Front Microbiol | 10.3389/fmicb.2023.1122947 | 2023 | | |
| Callose and Salicylic Acid Are Key Determinants of Strigolactone-Mediated Disease Resistance in Arabidopsis. | Zhao X, Liu Q, Tan L. | Plants (Basel) | 10.3390/plants13192766 | 2024 | | |
| Investigating the in-vitro antimicrobial activities of sorghum [Sorghum bicolor (L.) Moench] phenolic extracts on liver abscess causing bacterial pathogens. | Salih HM, Amachawadi RG, Kang Q, Smolensky D, Perumal R, Bowser SS, Prasad PVV, Nagaraja TG. | Front Cell Infect Microbiol | 10.3389/fcimb.2025.1568504 | 2025 | | |
| Transcriptome | Disparate Effects of Two Clerodane Diterpenes of Giant Goldenrod (Solidago gigantea Ait.) on Bacillus spizizenii. | Bozso Z, Lapat V, Ott PG, Moricz AM. | Int J Mol Sci | 10.3390/ijms25031531 | 2024 | |
| Mining the genome of Rhodococcus fascians, a plant growth-promoting bacterium gone astray. | Francis IM, Stes E, Zhang Y, Rangel D, Audenaert K, Vereecke D. | N Biotechnol | 10.1016/j.nbt.2016.01.009 | 2016 | | |
| Characterisation of the Antibiotic Profile of Lysobacter capsici AZ78, an Effective Biological Control Agent of Plant Pathogenic Microorganisms. | Brescia F, Vlassi A, Bejarano A, Seidl B, Marchetti-Deschmann M, Schuhmacher R, Puopolo G. | Microorganisms | 10.3390/microorganisms9061320 | 2021 | | |
| Transcriptome | The Perception of Rhizosphere Bacterial Communication Signals Leads to Transcriptome Reprogramming in Lysobacter capsici AZ78, a Plant Beneficial Bacterium. | Bejarano A, Perazzolli M, Pertot I, Puopolo G. | Front Microbiol | 10.3389/fmicb.2021.725403 | 2021 | |
| Complete Genome and Plasmid Sequences for Rhodococcus fascians D188 and Draft Sequences for Rhodococcus Isolates PBTS 1 and PBTS 2. | Stamler RA, Vereecke D, Zhang Y, Schilkey F, Devitt N, Randall JJ. | Genome Announc | 10.1128/genomea.00495-16 | 2016 | | |
| Metabolism | Methylated Cytokinins from the Phytopathogen Rhodococcus fascians Mimic Plant Hormone Activity. | Radhika V, Ueda N, Tsuboi Y, Kojima M, Kikuchi J, Kudo T, Sakakibara H. | Plant Physiol | 10.1104/pp.15.00787 | 2015 | |
| Total Synthesis of (±)-Isoperbergins and Correction of the Chemical Structure of Perbergin. | Almabruk KH, Chang JH, Mahmud T. | J Nat Prod | 10.1021/acs.jnatprod.6b00621 | 2016 | | |
| Quaternary ammonium biocides as antimicrobial agents protecting historical wood and brick. | Rajkowska K, Kozirog A, Otlewska A, Piotrowska M, Nowicka-Krawczyk P, Brycki B, Kunicka-Styczynska A, Gutarowska B. | Acta Biochim Pol | 10.18388/abp.2015_1134 | 2016 | | |
| Identification of a Novel Class of Photolyases as Possible Ancestors of Their Family. | Xu L, Chen S, Wen B, Shi H, Chi C, Liu C, Wang K, Tao X, Wang M, Lv J, Yan L, Ling L, Zhu G. | Mol Biol Evol | 10.1093/molbev/msab191 | 2021 | | |
| First Report of Rhodococcus Isolates Causing Pistachio Bushy Top Syndrome on 'UCB-1' Rootstock in California and Arizona. | Stamler RA, Kilcrease J, Kallsen C, Fichtner EJ, Cooke P, Heerema RJ, Randall JJ. | Plant Dis | 10.1094/pdis-12-14-1340-re | 2015 | | |
| Structural revision of sesbagrandiflorains A and B, and synthesis and biological evaluation of 6-methoxy-2-arylbenzofuran derivatives. | Noviany N, Samadi A, Carpenter EL, Abugrain ME, Hadi S, Purwitasari N, Indra G, Indra A, Mahmud T. | J Nat Med | 10.1007/s11418-020-01445-2 | 2021 | | |
| Phytochemical and Cytotoxic Aspects of Amaryllidaceae Alkaloids in Galanthus Species: A Review. | Georgiev B, Sidjimova B, Berkov S. | Plants (Basel) | 10.3390/plants13243577 | 2024 | | |
| Cytokinin oxidase gene CKX5 is modulated in the immunity of Arabidopsis to Botrytis cinerea. | Wang R, Li B, Zhang J, Chang L. | PLoS One | 10.1371/journal.pone.0298260 | 2024 | | |
| Comparative analysis of adenylate isopentenyl transferase genes in plant growth-promoting bacteria and plant pathogenic bacteria. | Wei X, Moreno-Hagelsieb G, Glick BR, Doxey AC. | Heliyon | 10.1016/j.heliyon.2023.e13955 | 2023 | | |
| Analysis of Environmental and Pathogenic Bacteria Attached to Aerosol Particles Size-Separated with a Metal Mesh Device. | Yin X, Kamba S, Yamamoto K, Ogura A, Wandera EA, Shah MM, Seto H, Kondo T, Ichinose Y, Hasegawa M. | Int J Environ Res Public Health | 10.3390/ijerph19095773 | 2022 | | |
| Bactericidal and anti-quorum sensing activity of repurposing drug Visomitin against Staphylococcus aureus. | Wu R, Wu Y, Wu P, Li H, She P. | Virulence | 10.1080/21505594.2024.2415952 | 2024 | | |
| Metabolism | Physiological and genetic differences amongst Rhodococcus species for using glycerol as a source for growth and triacylglycerol production. | Herrero OM, Moncalian G, Alvarez HM. | Microbiology (Reading) | 10.1099/mic.0.000232 | 2016 | |
| Structure-activity correlations for peptaibols obtained from clade Longibrachiatum of Trichoderma: A combined experimental and computational approach. | Balazs D, Marik T, Szekeres A, Vagvolgyi C, Kredics L, Tyagi C. | Comput Struct Biotechnol J | 10.1016/j.csbj.2023.02.046 | 2023 | | |
| Rhodococcus spp. interacts with human norovirus in clinical samples and impairs its replication on human intestinal enteroids. | Santiso-Bellon C, Randazzo W, Carmona-Vicente N, Pena-Gil N, Carcamo-Calvo R, Lopez-Navarro S, Navarro-Lleo N, Yebra MJ, Monedero V, Buesa J, Gozalbo-Rovira R, Rodriguez-Diaz J. | Gut Microbes | 10.1080/19490976.2025.2469716 | 2025 | | |
| The leafy gall syndrome induced by Rhodococcus fascians. | Stes E, Francis I, Pertry I, Dolzblasz A, Depuydt S, Vereecke D. | FEMS Microbiol Lett | 10.1111/1574-6968.12119 | 2013 | | |
| Antimicrobial, Antioxidant and Antiproliferative Secondary Metabolites from Inonotus nidus-pici. | Garadi Z, Dekany M, Moricz AM, Gaal A, Papp V, Beni S, Vanyolos A. | Molecules | 10.3390/molecules26185453 | 2021 | | |
| Pathogenicity | Rhodococcus fascians infection after haematopoietic cell transplantation: not just a plant pathogen? | Austin MC, Hallstrand TS, Hoogestraat DR, Balmforth G, Stephens K, Butler-Wu S, Yeung CC. | JMM Case Rep | 10.1099/jmmcr.0.005025 | 2016 | |
| Engineered geranyl diphosphate methyltransferase produces 2-methyl-dimethylallyl diphosphate as a noncanonical C6 unit for terpenoid biosynthesis. | Xia CY, Lu BW, Cui JY, Wang BY, Sun YY, Gan F. | Synth Syst Biotechnol | 10.1016/j.synbio.2022.12.002 | 2023 | | |
| The Lipid- and Polysaccharide-Rich Extracellular Polymeric Substances of Rhodococcus Support Biofilm Formation and Protection from Toxic Hydrocarbons. | Krivoruchko A, Nurieva D, Luppov V, Kuyukina M, Ivshina I. | Polymers (Basel) | 10.3390/polym17141912 | 2025 | | |
| Loop-Mediated Isothermal Amplification and Polymerase Chain Reaction Methods for Specific and Rapid Detection of Rhodococcus fascians. | Serdani M, Curtis M, Miller ML, Kraus J, Putnam ML. | Plant Dis | 10.1094/pdis-02-12-0214-re | 2013 | | |
| Gut microbiota and age shape susceptibility to clostridial enteritis in lorikeets under human care. | Minich D, Madden C, Navarro MA, Glowacki L, French-Kim K, Chan W, Evans MV, Soares K, Mrofchak R, Madan R, Ballash GA, LaPerle K, Paul S, Vodovotz Y, Uzal FA, Martinez M, Hausmann J, Junge RE, Hale VL. | Anim Microbiome | 10.1186/s42523-021-00148-7 | 2022 | | |
| Pathogenicity | Environment and Diet Influence the Bacterial Microbiome of Ambigolimax valentianus, an Invasive Slug in California. | Jackson D, Maltz MR, Freund HL, Borneman J, Aronson E. | Insects | 10.3390/insects12070575 | 2021 | |
| Ixodes ricinus tick bacteriome alterations based on a climatically representative survey in Hungary. | Toth AG, Farkas R, Papp M, Kilim O, Yun H, Makrai L, Maroti G, Gyurkovszky M, Kriko E, Solymosi N. | Microbiol Spectr | 10.1128/spectrum.01243-23 | 2023 | | |
| Chemical composition and antibacterial activity of essential oil of Ocimum ciliatum, as a new source of methyl chavicol, against ten phytopathogens | Moghaddam M, Alymanesh MR, Mehdizadeh L, Mirzaei H, Ghasemi Pirbalouti A. | Industrial crops and products. | 10.1016/j.indcrop.2014.05.006 | 2014 | | |
| Phylogeny | Clinicopathologic Features and Pathogens of Granulomatous Lobular Mastitis. | Li Y, Chen L, Zhang C, Wang Y, Hu J, Zhou M, Zhang X. | Breast Care (Basel) | 10.1159/000529391 | 2023 | |
| Metabolism | Seed Imbibition and Metabolism Contribute Differentially to Initial Assembly of the Soybean Holobiont. | Gerna D, Clara D, Antonielli L, Mitter B, Roach T. | Phytobiomes J | 10.1094/pbiomes-03-23-0019-mf | 2022 | |
| pFiD188, the linear virulence plasmid of Rhodococcus fascians D188. | Francis I, De Keyser A, De Backer P, Simon-Mateo C, Kalkus J, Pertry I, Ardiles-Diaz W, De Rycke R, Vandeputte OM, El Jaziri M, Holsters M, Vereecke D. | Mol Plant Microbe Interact | 10.1094/mpmi-08-11-0215 | 2012 | | |
| Phylogeny | The gut bacteria across life stages in the synanthropic fly Chrysomya megacephala. | Wang X, Gao Q, Wang W, Wang X, Lei C, Zhu F. | BMC Microbiol | 10.1186/s12866-018-1272-y | 2018 | |
| Genetics | (Pan)genomic analysis of two Rhodococcus isolates and their role in phenolic compound degradation. | Benning S, Pritsch K, Radl V, Siani R, Wang Z, Schloter M. | Microbiol Spectr | 10.1128/spectrum.03783-23 | 2024 | |
| Threats and opportunities of plant pathogenic bacteria. | Tarkowski P, Vereecke D. | Biotechnol Adv | 10.1016/j.biotechadv.2013.11.001 | 2014 | | |
| Metabolism | Plant-derived auxin plays an accessory role in symptom development upon Rhodococcus fascians infection. | Stes E, Prinsen E, Holsters M, Vereecke D. | Plant J | 10.1111/j.1365-313x.2011.04890.x | 2012 | |
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| Genetics | The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp. | Rolfe SA, Strelkov SE, Links MG, Clarke WE, Robinson SJ, Djavaheri M, Malinowski R, Haddadi P, Kagale S, Parkin IA, Taheri A, Borhan MH. | BMC Genomics | 10.1186/s12864-016-2597-2 | 2016 | |
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| Metabolism | Sequence and molecular characterization of a DNA region encoding the dibenzothiophene desulfurization operon of Rhodococcus sp. strain IGTS8. | Piddington CS, Kovacevich BR, Rambosek J. | Appl Environ Microbiol | 10.1128/aem.61.2.468-475.1995 | 1995 | |
| The fas operon of Rhodococcus fascians encodes new genes required for efficient fasciation of host plants. | Crespi M, Vereecke D, Temmerman W, Van Montagu M, Desomer J. | J Bacteriol | 10.1128/jb.176.9.2492-2501.1994 | 1994 | | |
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| Genetics | Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae. | Dittami SM, Barbeyron T, Boyen C, Cambefort J, Collet G, Delage L, Gobet A, Groisillier A, Leblanc C, Michel G, Scornet D, Siegel A, Tapia JE, Tonon T. | Front Genet | 10.3389/fgene.2014.00241 | 2014 | |
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| Transformation of Rhodococcus fascians by High-Voltage Electroporation and Development of R. fascians Cloning Vectors. | Desomer J, Dhaese P, Montagu MV. | Appl Environ Microbiol | 10.1128/aem.56.9.2818-2825.1990 | 1990 | | |
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| Efficient Transformation of the Cephamycin C Producer Nocardia lactamdurans and Development of Shuttle and Promoter-Probe Cloning Vectors. | Kumar CV, Coque JJ, Martin JF. | Appl Environ Microbiol | 10.1128/aem.60.11.4086-4093.1994 | 1994 | | |
| Integrated OMICS guided engineering of biofuel butanol-tolerance in photosynthetic Synechocystis sp. PCC 6803. | Zhu H, Ren X, Wang J, Song Z, Shi M, Qiao J, Tian X, Liu J, Chen L, Zhang W. | Biotechnol Biofuels | 10.1186/1754-6834-6-106 | 2013 | | |
| Metabolism | Should I fight or should I grow now? The role of cytokinins in plant growth and immunity and in the growth-defence trade-off. | Albrecht T, Argueso CT. | Ann Bot | 10.1093/aob/mcw211 | 2017 | |
| Metabolism | Calcite biomineralization by bacterial isolates from the recently discovered pristine karstic herrenberg cave. | Rusznyak A, Akob DM, Nietzsche S, Eusterhues K, Totsche KU, Neu TR, Frosch T, Popp J, Keiner R, Geletneky J, Katzschmann L, Schulze ED, Kusel K. | Appl Environ Microbiol | 10.1128/aem.06568-11 | 2012 | |
| Metabolism | Cyclic lipodepsipeptides produced by Pseudomonas spp. naturally present in raw milk induce inhibitory effects on microbiological inhibitor assays for antibiotic residue screening. | Reybroeck W, De Vleeschouwer M, Marchand S, Sinnaeve D, Heylen K, De Block J, Madder A, Martins JC, Heyndrickx M. | PLoS One | 10.1371/journal.pone.0098266 | 2014 | |
| Cytokinin Production by the Rice Blast Fungus Is a Pivotal Requirement for Full Virulence. | Chanclud E, Kisiala A, Emery NR, Chalvon V, Ducasse A, Romiti-Michel C, Gravot A, Kroj T, Morel JB. | PLoS Pathog | 10.1371/journal.ppat.1005457 | 2016 | | |
| Metabolism | Microbial desulfurization of gasoline in a Mycobacterium goodii X7B immobilized-cell system. | Li F, Xu P, Feng J, Meng L, Zheng Y, Luo L, Ma C. | Appl Environ Microbiol | 10.1128/aem.71.1.276-281.2005 | 2005 | |
| Influence of Plasmid Type on the Replication of Rhodococcus equi in Host Macrophages. | Willingham-Lane JM, Berghaus LJ, Giguere S, Hondalus MK. | mSphere | 10.1128/msphere.00186-16 | 2016 | | |
| Enzymology | Isocitrate lyase is essential for pathogenicity of the fungus Leptosphaeria maculans to canola (Brassica napus). | Idnurm A, Howlett BJ. | Eukaryot Cell | 10.1128/ec.1.5.719-724.2002 | 2002 | |
| Metabolism | Crystal structure and substrate specificity of plant adenylate isopentenyltransferase from Humulus lupulus: distinctive binding affinity for purine and pyrimidine nucleotides. | Chu HM, Ko TP, Wang AH. | Nucleic Acids Res | 10.1093/nar/gkp1093 | 2010 | |
| Fasciation induction by the phytopathogen Rhodococcus fascians depends upon a linear plasmid encoding a cytokinin synthase gene. | Crespi M, Messens E, Caplan AB, van Montagu M, Desomer J. | EMBO J | 10.1002/j.1460-2075.1992.tb05116.x | 1992 | | |
| Metabolism | The role of cis-zeatin-type cytokinins in plant growth regulation and mediating responses to environmental interactions. | Schafer M, Brutting C, Meza-Canales ID, Grosskinsky DK, Vankova R, Baldwin IT, Meldau S. | J Exp Bot | 10.1093/jxb/erv214 | 2015 | |
| Metabolism | Fate of a Pseudomonas savastanoi pv. savastanoi type III secretion system mutant in olive plants (Olea europaea L.). | Perez-Martinez I, Rodriguez-Moreno L, Lambertsen L, Matas IM, Murillo J, Tegli S, Jimenez AJ, Ramos C. | Appl Environ Microbiol | 10.1128/aem.00133-10 | 2010 | |
| Genetics | New vector system for random, single-step integration of multiple copies of DNA into the Rhodococcus genome. | Sallam KI, Tamura N, Imoto N, Tamura T. | Appl Environ Microbiol | 10.1128/aem.02131-09 | 2010 | |
| Metabolism | A unique virulence factor for proliferation and dwarfism in plants identified from a phytopathogenic bacterium. | Hoshi A, Oshima K, Kakizawa S, Ishii Y, Ozeki J, Hashimoto M, Komatsu K, Kagiwada S, Yamaji Y, Namba S. | Proc Natl Acad Sci U S A | 10.1073/pnas.0813038106 | 2009 | |
| Identification, expression, and comparative genomic analysis of the IPT and CKX gene families in Chinese cabbage (Brassica rapa ssp. pekinensis). | Liu Z, Lv Y, Zhang M, Liu Y, Kong L, Zou M, Lu G, Cao J, Yu X. | BMC Genomics | 10.1186/1471-2164-14-594 | 2013 | | |
| Metabolism | Reactive oxygen species and ethylene play a positive role in lateral root base nodulation of a semiaquatic legume. | D'Haeze W, De Rycke R, Mathis R, Goormachtig S, Pagnotta S, Verplancke C, Capoen W, Holsters M. | Proc Natl Acad Sci U S A | 10.1073/pnas.1333899100 | 2003 | |
| Metabolism | Microcosm enrichment of biphenyl-degrading microbial communities from soils and sediments. | Wagner-Dobler I, Bennasar A, Vancanneyt M, Strompl C, Brummer I, Eichner C, Grammel I, Moore ER. | Appl Environ Microbiol | 10.1128/aem.64.8.3014-3022.1998 | 1998 | |
| Information processing without brains--the power of intercellular regulators in plants. | Busch W, Benfey PN. | Development | 10.1242/dev.034868 | 2010 | | |
| Phylogeny | Temporal variability of the bioaerosol background at a subway station: concentration level, size distribution, and diversity of airborne bacteria. | Dybwad M, Skogan G, Blatny JM. | Appl Environ Microbiol | 10.1128/aem.02849-13 | 2014 | |
| Enzymology | Ectopic expression of PtaRHE1, encoding a poplar RING-H2 protein with E3 ligase activity, alters plant development and induces defence-related responses. | Mukoko Bopopi J, Vandeputte OM, Himanen K, Mol A, Vaessen Q, El Jaziri M, Baucher M. | J Exp Bot | 10.1093/jxb/erp305 | 2010 | |
| Phylogeny | Taxonomy, Physiology, and Natural Products of Actinobacteria. | Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Meier-Kolthoff JP, Klenk HP, Clement C, Ouhdouch Y, van Wezel GP. | Microbiol Mol Biol Rev | 10.1128/mmbr.00019-15 | 2016 | |
| Metabolism | The unknown soldier in citrus plants: polyamines-based defensive mechanisms against biotic and abiotic stresses and their relationship with other stress-associated metabolites. | Nehela Y, Killiny N. | Plant Signal Behav | 10.1080/15592324.2020.1761080 | 2020 | |
| Transcriptome | Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci. | Creason AL, Vandeputte OM, Savory EA, Davis EW, Putnam ML, Hu E, Swader-Hines D, Mol A, Baucher M, Prinsen E, Zdanowska M, Givan SA, El Jaziri M, Loper JE, Mahmud T, Chang JH. | PLoS One | 10.1371/journal.pone.0101996 | 2014 | |
| Pathogenicity | Development, validation, and application of PCR primers for detection of tetracycline efflux genes of gram-negative bacteria. | Aminov RI, Chee-Sanford JC, Garrigues N, Teferedegne B, Krapac IJ, White BA, Mackie RI. | Appl Environ Microbiol | 10.1128/aem.68.4.1786-1793.2002 | 2002 | |
| Phylogeny | Bacterial communities from shoreline environments (costa da morte, northwestern Spain) affected by the prestige oil spill. | Alonso-Gutierrez J, Figueras A, Albaiges J, Jimenez N, Vinas M, Solanas AM, Novoa B. | Appl Environ Microbiol | 10.1128/aem.01776-08 | 2009 | |
| Enzymology | Functional characterization of the Sinorhizobium meliloti acetate metabolism genes aceA, SMc00767, and glcB. | Ramirez-Trujillo JA, Encarnacion S, Salazar E, de los Santos AG, Dunn MF, Emerich DW, Calva E, Hernandez-Lucas I. | J Bacteriol | 10.1128/jb.00385-07 | 2007 | |
| Metabolism | The Sinorhizobium meliloti nutrient-deprivation-induced tyrosine degradation gene hmgA is controlled by a novel member of the arsR family of regulatory genes. | Milcamps A, Struffi P, de Bruijn FJ. | Appl Environ Microbiol | 10.1128/aem.67.6.2641-2648.2001 | 2001 | |
| Internally controlled real-time PCR method for quantitative species-specific detection and vapA genotyping of Rhodococcus equi. | Rodriguez-Lazaro D, Lewis DA, Ocampo-Sosa AA, Fogarty U, Makrai L, Navas J, Scortti M, Hernandez M, Vazquez-Boland JA. | Appl Environ Microbiol | 10.1128/aem.02706-05 | 2006 | | |
| Metabolism | Two distinct monooxygenases for alkane oxidation in Nocardioides sp. strain CF8. | Hamamura N, Yeager CM, Arp DJ. | Appl Environ Microbiol | 10.1128/aem.67.11.4992-4998.2001 | 2001 | |
| Enzymology | Isolation and characterization of a rolling-circle-type plasmid from Rhodococcus erythropolis and application of the plasmid to multiple-recombinant-protein expression. | Nakashima N, Tamura T. | Appl Environ Microbiol | 10.1128/aem.70.9.5557-5568.2004 | 2004 | |
| Enzymology | Targeted disruption of the kstD gene encoding a 3-ketosteroid delta(1)-dehydrogenase isoenzyme of Rhodococcus erythropolis strain SQ1. | van Der Geize R, Hessels GI, van Gerwen R, Vrijbloed JW, van Der Meijden P, Dijkhuizen L. | Appl Environ Microbiol | 10.1128/aem.66.5.2029-2036.2000 | 2000 | |
| Physical and genetic map of the obligate intracellular bacterium Coxiella burnetii. | Willems H, Jager C, Baljer G. | J Bacteriol | 10.1128/jb.180.15.3816-3822.1998 | 1998 | | |
| Biotechnology | Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. | Schroder J, Maus I, Trost E, Tauch A. | BMC Genomics | 10.1186/1471-2164-12-545 | 2011 | |
| Pathogenicity | Pantoea agglomerans strain EH318 produces two antibiotics that inhibit Erwinia amylovora in vitro. | Wright SA, Zumoff CH, Schneider L, Beer SV. | Appl Environ Microbiol | 10.1128/aem.67.1.284-292.2001 | 2001 | |
| Phylogeny | HP0333, a member of the dprA family, is involved in natural transformation in Helicobacter pylori. | Ando T, Israel DA, Kusugami K, Blaser MJ. | J Bacteriol | 10.1128/jb.181.18.5572-5580.1999 | 1999 | |
| Identification of genes in the RosR regulon of Rhizobium etli. | Bittinger MA, Handelsman J. | J Bacteriol | 10.1128/jb.182.6.1706-1713.2000 | 2000 | | |
| Enzymology | Identification and mutagenesis by allelic exchange of choE, encoding a cholesterol oxidase from the intracellular pathogen Rhodococcus equi. | Navas J, Gonzalez-Zorn B, Ladron N, Garrido P, Vazquez-Boland JA. | J Bacteriol | 10.1128/jb.183.16.4796-4805.2001 | 2001 | |
| Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway. | Mormann S, Lomker A, Ruckert C, Gaigalat L, Tauch A, Puhler A, Kalinowski J. | BMC Genomics | 10.1186/1471-2164-7-205 | 2006 | | |
| Metabolism | Identification and characterization of an N-acylhomoserine lactone-dependent quorum-sensing system in Pseudomonas putida strain IsoF. | Steidle A, Allesen-Holm M, Riedel K, Berg G, Givskov M, Molin S, Eberl L. | Appl Environ Microbiol | 10.1128/aem.68.12.6371-6382.2002 | 2002 | |
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Pathogenicity | Relationships between colony morphotypes and oil tolerance in Rhodococcus rhodochrous. | Iwabuchi N, Sunairi M, Anzai H, Nakajima M, Harayama S. | Appl Environ Microbiol | 10.1128/aem.66.11.5073-5077.2000 | 2000 | |
| Surface microflora of four smear-ripened cheeses. | Mounier J, Gelsomino R, Goerges S, Vancanneyt M, Vandemeulebroecke K, Hoste B, Scherer S, Swings J, Fitzgerald GF, Cogan TM. | Appl Environ Microbiol | 10.1128/aem.71.11.6489-6500.2005 | 2005 | | |
| Phylogeny | Rhodococcus parequi sp. nov., a new species isolated from equine farm soil closely related to the pathogen Rhodococcus equi. | Vazquez-Boland JA, Val-Calvo J, Duquesne F, Decorosi F, Viti C, Petry S, Scortti M. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006679 | 2025 | |
| Phylogeny | Rhodococcus cerastii sp. nov. and Rhodococcus trifolii sp. nov., two novel species isolated from leaf surfaces. | Kampfer P, Wellner S, Lohse K, Lodders N, Martin K. | Int J Syst Evol Microbiol | 10.1099/ijs.0.044958-0 | 2013 | |
| Phylogeny | Rhodococcus yunnanensis sp. nov., a mesophilic actinobacterium isolated from forest soil. | Zhang YQ, Li WJ, Kroppenstedt RM, Kim CJ, Chen GZ, Park DJ, Xu LH, Jiang CL. | Int J Syst Evol Microbiol | 10.1099/ijs.0.63390-0 | 2005 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive10885.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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