Strain identifier

BacDive ID: 10882

Type strain: No

Species: Rhodococcus fascians

Strain Designation: CF 19, CF 107(505)

Strain history: CIP <- 1995, DSM <- ATCC <- W.H. Burkholder: strain CF19, Corynebacterium fascians <- P.E. Tilford: strain CF 107(505)

NCBI tax ID(s): 1828 (species)

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General

@ref: 8556

BacDive-ID: 10882

DSM-Number: 20131

keywords: 16S sequence, mesophilic, plant pathogen

description: Rhodococcus fascians CF 19 is a mesophilic plant pathogen.

NCBI tax id

  • NCBI tax id: 1828
  • Matching level: species

strain history

@refhistory
8556<- ATCC <- W.H. Burkholder, CF 19 <- P.E. Tilford
119289CIP <- 1995, DSM <- ATCC <- W.H. Burkholder: strain CF19, Corynebacterium fascians <- P.E. Tilford: strain CF 107(505)

doi: 10.13145/bacdive10882.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus fascians
  • full scientific name: Rhodococcus fascians (Tilford 1936) Goodfellow 1984

  • synonyms

    @refsynonym
    20215Corynebacterium fascians
    20215Rhodococcoides fascians
    20215Phytomonas fascians
    20215Rhodococcus luteus

@ref: 8556

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus fascians

full scientific name: Rhodococcus fascians (Tilford 1936) Goodfellow 1984 emend. Nouioui et al. 2018

strain designation: CF 19, CF 107(505)

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8556CORYNEBACTERIUM AGAR (DSMZ Medium 53)yeshttps://mediadive.dsmz.de/medium/53Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
35704MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119289CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
8556positivegrowth30mesophilic
35704positivegrowth30mesophilic

Physiology and metabolism

compound production

@refcompound
8556penicillin derivatives
20216Penicillin derivatives

murein

  • @ref: 8556
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYG
8556------+-------------

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
8556-----+-+/-------------

Safety information

risk assessment

@refpathogenicity plantbiosafety levelbiosafety level comment
8556yes1Risk group (German classification)
1192891Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Rhodococcus fascians partial 16S rRNA
  • accession: X53204
  • length: 1338
  • database: ena
  • NCBI tax ID: 1828

External links

@ref: 8556

culture collection no.: DSM 20131, ATCC 12975, CIP 104625, NCPPB 3836

straininfo link

  • @ref: 80137
  • straininfo: 35706

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8556Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20131)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20131
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35704Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16554
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
80137Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35706.1StrainInfo: A central database for resolving microbial strain identifiers
119289Curators of the CIPCollection of Institut Pasteur (CIP 104625)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104625