Name: Nocardia puris DSM 44599
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 10767

Type strain:

Species: Nocardia puris

Culture col. no.: DSM 44599, CCUG 48752, NRRL B-24204, IMMIB R-145, JCM 13031, CIP 108222, IFM 10564, NBRC 108233

Strain history: CIP <- 2003, A.F. Yassin, Bonn Univ., Bonn, Germany: strain IMMIB R-145

NCBI tax ID(s): 1210090 (strain), 208602 (species)

SI-ID 97526

DSM 44599, NRRL B-24204, CCUG 48752, JCM 13031, CIP 108222

Special Collections

Other strains from Nocardia puris

Section

Nocardia puris DSM 44599 is an aerobe, spore-forming human pathogen that builds an aerial mycelium and was isolated from human abscess.

spore-forming
aerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia puris**
	Full Scientific Name (LPSN)	Nocardia puris Yassin et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #122062]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.478

[Ref.: #122062]	Cell shape	rod-shaped

[Ref.: #122062]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #20079]	Colony color	Beige red (3012)
[Ref.: #20079]	Incubation period	10-14 days
[Ref.: #20079]	Cultivation medium used	ISP 2

[Ref.: #20079]	Colony color	Ivory (1014)
[Ref.: #20079]	Incubation period	10-14 days
[Ref.: #20079]	Cultivation medium used	ISP 3

[Ref.: #20079]	Colony color	Colorless
[Ref.: #20079]	Incubation period	10-14 days
[Ref.: #20079]	Cultivation medium used	ISP 4

[Ref.: #20079]	Colony color	Ivory (1014)
[Ref.: #20079]	Incubation period	10-14 days
[Ref.: #20079]	Cultivation medium used	ISP 5

[Ref.: #20079]	Colony color	Ivory (1014)
[Ref.: #20079]	Incubation period	10-14 days
[Ref.: #20079]	Cultivation medium used	ISP 6

[Ref.: #20079]	Colony color	Beige red (3012)
[Ref.: #20079]	Incubation period	10-14 days
[Ref.: #20079]	Cultivation medium used	ISP 7

[Ref.: #20079]	Multicellular complex forming ability	yes
[Ref.: #20079]	Multicellular complex name	Aerial Mycelium
[Ref.: #20079]	Multicellular complex color	White
[Ref.: #20079]	Medium Name (multicellularity)	ISP 2

[Ref.: #20079]	Multicellular complex forming ability	no
[Ref.: #20079]	Medium Name (multicellularity)	ISP 3

[Ref.: #20079]	Multicellular complex forming ability	no
[Ref.: #20079]	Medium Name (multicellularity)	ISP 4

[Ref.: #20079]	Multicellular complex forming ability	no
[Ref.: #20079]	Medium Name (multicellularity)	ISP 5

[Ref.: #20079]	Multicellular complex forming ability	no
[Ref.: #20079]	Medium Name (multicellularity)	ISP 6

[Ref.: #20079]	Multicellular complex forming ability	yes
[Ref.: #20079]	Multicellular complex name	Aerial Mycelium
[Ref.: #20079]	Multicellular complex color	White
[Ref.: #20079]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11914]

Culture medium

PEPTONE - MEAT EXTRACT - SOIL EXTRACT AGAR (PFE) (DSMZ Medium 251)

[Ref.: #11914]

Culture medium growth

[Ref.: #11914]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11914]

Culture medium composition

expand / minimize

[Ref.: #11914]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #11914]

Culture medium growth

[Ref.: #11914]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11914]

Culture medium composition

expand / minimize

[Ref.: #20079]

Culture medium

ISP 2

[Ref.: #20079]

Culture medium growth

[Ref.: #20079]

Culture medium composition

expand / minimize

[Ref.: #20079]

Culture medium

ISP 3

[Ref.: #20079]

Culture medium growth

[Ref.: #20079]

Culture medium composition

expand / minimize

[Ref.: #20079]

Culture medium

ISP 4

[Ref.: #20079]

Culture medium growth

[Ref.: #20079]

Culture medium composition

expand / minimize

[Ref.: #20079]

Culture medium

ISP 5

[Ref.: #20079]

Culture medium growth

[Ref.: #20079]

Culture medium composition

expand / minimize

[Ref.: #20079]

Culture medium

ISP 6

[Ref.: #20079]

Culture medium growth

[Ref.: #20079]

Culture medium composition

expand / minimize

[Ref.: #20079]

Culture medium

ISP 7

[Ref.: #20079]

Culture medium growth

[Ref.: #20079]

Culture medium composition

expand / minimize

[Ref.: #33919]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33919]

Culture medium growth

[Ref.: #33919]

Culture medium composition

expand / minimize

[Ref.: #122062]

Culture medium

CIP Medium 72

[Ref.: #122062]

Culture medium growth

[Ref.: #122062]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11914]		growth	28 °C
[Ref.: #20079]		optimum	28 °C
[Ref.: #33919]		growth	37 °C
[Ref.: #58315]		growth	30-37 °C
[Ref.: #67770]		growth	35 °C
[Ref.: #122062]		growth	25-41 °C
[Ref.: #122062]	no	growth	10 °C
[Ref.: #122062]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #58315]	Oxygen tolerance	aerobe
[Ref.: #122062]	Oxygen tolerance	obligate aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %92.1

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #122062]		NaCl		growth	0-8	%
[Ref.: #122062]		NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-8(H₆, ω-cycl), 2,3-epoxy-MK-8(H₆, ω-cycl)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #20079]	arabinose ChEBI	-
[Ref.: #20079]	cellulose ChEBI	-
[Ref.: #122062]	citrate ChEBI	-	carbon source
[Ref.: #122062]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #20079]	fructose ChEBI	+
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #20079]	glucose ChEBI	+
[Ref.: #122062]	hippurate ChEBI	-	hydrolysis
[Ref.: #20079]	mannitol ChEBI	+
[Ref.: #20079]	myo-inositol ChEBI	+
[Ref.: #122062]	nitrate ChEBI	+	reduction
[Ref.: #122062]	nitrate ChEBI	-	respiration
[Ref.: #122062]	nitrite ChEBI	-	reduction
[Ref.: #20079]	raffinose ChEBI	-
[Ref.: #20079]	rhamnose ChEBI	-
[Ref.: #20079]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #20079]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122062]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #122062]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122062]		acetoin ChEBI	-
[Ref.: #122062]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122062]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122062]	amylase	-
[Ref.: #122062]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #122062]	caseinase	-	3.4.21.50
[Ref.: #122062]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #122062]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122062]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122062]	gelatinase	-
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #122062]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122062]	lipase	-
[Ref.: #122062]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122062]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122062]	oxidase	-
[Ref.: #122062]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122062]	tryptophan deaminase	-
[Ref.: #122062]	tween esterase	-
[Ref.: #122062]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122062]	2652	not determinedn.d.	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	+	+	+	+	+	-	-	-	+	+	-	-	-	-	-	-	-	+	-	+	-	-	+	-	-	+	-	+

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #20079]	428	not determinedn.d.	-	-	+	-	-	+	-	+	+/-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	+	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20079]	861	not determinedn.d.	+	+	+	-	+	+	+	+	-	+	+	-	+	-	+	+	-	-	-
[Ref.: #122062]	10998	-	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	+	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	photosynthesis	100	14 of 14
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	IAA biosynthesis	100	3 of 3
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	heme metabolism	92.86	13 of 14
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	purine metabolism	78.72	74 of 94
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	lipid metabolism	77.42	24 of 31
[Ref.: #66794]	methionine metabolism	76.92	20 of 26
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	aclacinomycin biosynthesis	71.43	5 of 7
[Ref.: #66794]	tryptophan metabolism	71.05	27 of 38
[Ref.: #66794]	oxidative phosphorylation	70.33	64 of 91
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	sulfate reduction	69.23	9 of 13
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	androgen and estrogen metabolism	68.75	11 of 16
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	lysine metabolism	66.67	28 of 42
[Ref.: #66794]	molybdenum cofactor biosynthesis	66.67	6 of 9
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	carotenoid biosynthesis	63.64	14 of 22
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	elloramycin biosynthesis	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	allantoin degradation	55.56	5 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	daunorubicin biosynthesis	55.56	5 of 9
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	degradation of pentoses	42.86	12 of 28
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	degradation of sugar acids	40	10 of 25
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	chlorophyll metabolism	38.89	7 of 18
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11914]	Sample type/isolated from	human abscess
[Ref.: #11914]	Country	Germany
[Ref.: #11914]	Country ISO 3 Code	DEU
[Ref.: #11914]	Continent	Europe

[Ref.: #58315]	Sample type/isolated from	Human abscess
[Ref.: #58315]	Country	Germany
[Ref.: #58315]	Country ISO 3 Code	DEU
[Ref.: #58315]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human abscess
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe

[Ref.: #122062]	Sample type/isolated from	Human, Abscess
[Ref.: #122062]	Country	Germany
[Ref.: #122062]	Country ISO 3 Code	DEU
[Ref.: #122062]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Other	#Abscess
#Infection	#Patient	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF797314 (>99% sequence identity) for Nocardia from Microbeatlas

Aquatic Samples	17
Soil Samples	161
Animal Samples	35
Plant Samples	29
Total Samples	242

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11914]	Pathogenicity (human)	yes, in single cases
[Ref.: #11914]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20079]	Biosafety level	2	German classification
[Ref.: #122062]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Nocardia puris partial 16S rRNA gene, type strain IMMIB R-145T	AJ508748	1474	GenBank ENA	208602 tax ID	*
[Ref.: #20218]	Nocardia puris strain DSM 44599 isolate VNS36 16S ribosomal RNA gene, partial sequence	AY903618	606	GenBank ENA	208602 tax ID	*
[Ref.: #20218]	Nocardia puris culture-collection CDC:W8367 16S ribosomal RNA gene, partial sequence	GQ217500	1441	GenBank ENA	208602 tax ID	*
[Ref.: #20218]	Nocardia puris strain DSM 44599 16S ribosomal RNA gene, partial sequence	JF797314	1414	GenBank ENA	208602 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardia puris NBRC 108233	GCA_001613185	contig	GenBank ENA	1210090 tax ID
[Ref.: #67770]	Nocardia puris DSM 44599	GCA_003315035	scaffold	GenBank ENA	208602 tax ID
[Ref.: #66792]	Nocardia puris NBRC 108233	1210090.4	wgs	PATRIC	1210090 tax ID	*
[Ref.: #66792]	Nocardia puris strain DSM 44599	208602.3	wgs	PATRIC	208602 tax ID	*
[Ref.: #66792]	Nocardia puris NBRC 108233	2675903655	draft	JGI IMG/M	1210090 tax ID	*
[Ref.: #66792]	Nocardia puris DSM 44599	2770939563	draft	JGI IMG/M	208602 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardia puris DSM 44599 NCBI: GCA_003315035.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardia puris NBRC 108233 PATRIC: 1210090.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.478	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.434	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	59.45	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.1	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.956	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

[Ref.: #11914]

Culture collection no.

DSM 44599, CCUG 48752, NRRL B-24204, IMMIB R-145, JCM 13031, CIP 108222, IFM 10564, NBRC 108233

[Ref.: #80035]

SI-ID 97526

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Nocardia panacis sp. nov., a novel actinomycete with antiphytopathogen activity isolated from the rhizosphere of Panax notoginseng.	Hu JY, Li L, Peng G, Li YQ, Xu LH, Guan HL, Zhao LX, Miao CP	Antonie Van Leeuwenhoek	10.1007/s10482-019-01326-z	2019	*
Phylogeny	Nocardia puris sp. nov.	Yassin AF, Straubler B, Schumann P, Schaal KP	Int J Syst Evol Microbiol	10.1099/ijs.0.02593-0	2003	*

References

#11914

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44599

#20079

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33919 ; Curators of the CIP;
#58315 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48752

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80035

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97526.1 )

#122062 Collection of Institut Pasteur ; Curators of the CIP; CIP 108222
* These data were automatically processed and therefore are not curated

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Nocardia puris DSM 44599

Nocardia puris NBRC 108233

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