Name: Nocardia beijingensis 02
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10768

Type strain:

Species: Nocardia beijingensis

Strain Designation: 02, O2 (AS 4.1521)

Culture col. no.: CCUG 46096, DSM 44636, AS 4.1521, CIP 107257, IFO 16342, JCM 10666, NBRC 16342, CGMCC 4.1521, IFM 10174, KCTC 19931, NCIMB 13870

Strain history: CIP <- 2001, JCM <- Z. Liu, China, strain: O2 (AS 4.1521)

NCBI tax ID(s): 1210068 (strain), 95162 (species)

SI-ID 100822

IFO 16342, JCM 10666, DSM 44636, KCTC 19931, AS 4.1521, CIP 107257, CCUG 46096, NBRC 16342, NCIMB 13870, CGMCC 4.1521

Other strains from Nocardia beijingensis

N. beijingensis DSM 43474, SN 115
N. beijingensis DSM 45494, UTMC 1162
N. beijingensis CCUG 44745
N. beijingensis CCUG 46263
N. beijingensis CCUG 47708
N. beijingensis CCUG 53098

Section

Nocardia beijingensis 02 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from mud from a sewage ditch.

spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia beijingensis**
	Full Scientific Name (LPSN)	Nocardia beijingensis Wang et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #116781]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #116781]	Cell shape	rod-shaped

[Ref.: #116781]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.471

[Ref.: #69358]	Colony color	Cream (9001)
[Ref.: #69358]	Cultivation medium used	ISP 2

[Ref.: #69358]	Colony color	Colourless
[Ref.: #69358]	Cultivation medium used	ISP 4

[Ref.: #69358]	Colony color	Clay brown (8003)
[Ref.: #69358]	Cultivation medium used	suter with tyrosine

[Ref.: #69358]	Colony color	Nut brown (8011)
[Ref.: #69358]	Cultivation medium used	ISP 5

[Ref.: #69358]	Colony color	Pastel yellow (1034)
[Ref.: #69358]	Cultivation medium used	ISP 3

[Ref.: #69358]	Colony color	Pastel yellow (1034)
[Ref.: #69358]	Cultivation medium used	ISP 6

[Ref.: #69358]	Colony color	Signal orange (2010)
[Ref.: #69358]	Cultivation medium used	suter without tyrosine

[Ref.: #69358]	Colony color	Terra brown (8028)
[Ref.: #69358]	Cultivation medium used	ISP 7

[Ref.: #69358]	Pigment production	yes
[Ref.: #69358]	Pigment name	Melanin
[Ref.: #69358]	Pigment production	yes
[Ref.: #69358]	Pigmentation color	Pale brown (8025), fawn brown (8007), ochre brown (8001)
[Ref.: #69358]	Pigment name	soluble pigment

[Ref.: #69358]	Multicellular complex forming ability	yes
[Ref.: #69358]	Multicellular complex name	Aerial mycelium
[Ref.: #69358]	Multicellular complex color	Daffodil yellow (1007)
[Ref.: #69358]	Medium Name (multicellularity)	ISP 2

[Ref.: #69358]	Multicellular complex forming ability	yes
[Ref.: #69358]	Multicellular complex name	Aerial mycelium
[Ref.: #69358]	Multicellular complex color	Cream (9001)
[Ref.: #69358]	Medium Name (multicellularity)	ISP 3

[Ref.: #69358]	Multicellular complex forming ability	yes
[Ref.: #69358]	Multicellular complex name	Aerial mycelium
[Ref.: #69358]	Multicellular complex color	Cream (9001)
[Ref.: #69358]	Medium Name (multicellularity)	ISP 4

[Ref.: #69358]	Multicellular complex forming ability	yes
[Ref.: #69358]	Multicellular complex name	Aerial mycelium
[Ref.: #69358]	Multicellular complex color	Light ivory (1015)
[Ref.: #69358]	Medium Name (multicellularity)	ISP 5

[Ref.: #69358]	Multicellular complex forming ability	yes
[Ref.: #69358]	Multicellular complex name	Aerial mycelium
[Ref.: #69358]	Multicellular complex color	Light ivory (1015)
[Ref.: #69358]	Medium Name (multicellularity)	ISP 6

[Ref.: #69358]	Multicellular complex forming ability	yes
[Ref.: #69358]	Multicellular complex name	Aerial mycelium
[Ref.: #69358]	Multicellular complex color	Light ivoryn (1015)
[Ref.: #69358]	Medium Name (multicellularity)	ISP 7

[Ref.: #69358]	Multicellular complex forming ability	yes
[Ref.: #69358]	Multicellular complex name	Aerial mycelium
[Ref.: #69358]	Multicellular complex color	Light ivory (1015)
[Ref.: #69358]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69358]	Multicellular complex forming ability	yes
[Ref.: #69358]	Multicellular complex name	Aerial mycelium
[Ref.: #69358]	Multicellular complex color	Light ivory (1015)
[Ref.: #69358]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69358]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69358]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69358]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69358]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11945]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #11945]

Culture medium growth

[Ref.: #11945]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11945]

Culture medium composition

expand / minimize

[Ref.: #11945]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #11945]

Culture medium growth

[Ref.: #11945]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11945]

Culture medium composition

expand / minimize

[Ref.: #32862]

Culture medium

MEDIUM 115 - for Nocardia otitidiscaviarum and Nocardia diaphanozonaria

[Ref.: #32862]

Culture medium growth

[Ref.: #32862]

Culture medium composition

expand / minimize

[Ref.: #116781]

Culture medium

CIP Medium 115

[Ref.: #116781]

Culture medium growth

[Ref.: #116781]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11945]		growth	28 °C
[Ref.: #32862]		growth	30 °C
[Ref.: #57057]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #116781]		growth	25-41 °C
[Ref.: #116781]	no	growth	10 °C
[Ref.: #116781]	no	growth	45 °C

[Ref.: #11945]	Temperature range	mesophilic
[Ref.: #32862]	Temperature range	mesophilic
[Ref.: #57057]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116781]	Temperature range	psychrophilic
[Ref.: #116781]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57057]	Oxygen tolerance	aerobe
[Ref.: #116781]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %97

	Salt	Tested relation		Salt conc.
[Ref.: #69358]	NaCl		growth	0-5	%
[Ref.: #116781]	NaCl		growth	0-4	%
[Ref.: #116781]	NaCl	no	growth	6	%
[Ref.: #116781]	NaCl	no	growth	8	%
[Ref.: #116781]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69358]	arabinose ChEBI	-	growth
[Ref.: #69358]	cellulose ChEBI	-	growth
[Ref.: #116781]	citrate ChEBI	-	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #116781]	esculin ChEBI	-	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69358]	fructose ChEBI	-	growth
[Ref.: #69358]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69358]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69358]	mannose ChEBI	-	growth
[Ref.: #116781]	nitrate ChEBI	+	reduction
[Ref.: #116781]	nitrate ChEBI	-	respiration
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #116781]	nitrite ChEBI	-	reduction
[Ref.: #69358]	raffinose ChEBI	-	growth
[Ref.: #69358]	rhamnose ChEBI	-	growth
[Ref.: #69358]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69358]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116781]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #116781]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116781]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116781]	amylase	-
[Ref.: #116781]	beta-galactosidase	-	3.2.1.23
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #116781]	caseinase	-	3.4.21.50
[Ref.: #116781]	catalase	+	1.11.1.6
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116781]	DNase	-
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116781]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #116781]	gelatinase	-
[Ref.: #116781]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116781]	lipase	-
[Ref.: #116781]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #116781]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116781]	oxidase	+
[Ref.: #116781]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #116781]	tryptophan deaminase	-
[Ref.: #116781]	tween esterase	-
[Ref.: #116781]	urease	+	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116781]	2111	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	+	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	+	+	-	+

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #11945]	4275	-	-	-	+	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	+
[Ref.: #69358]	3851	-	-	-	+	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69358]	6035	not determinedn.d.	+	+/-	+	+/-	+	+/-	-	+/-	-	+	+/-	-	-	-	+	-	-	-	-
[Ref.: #116781]	10205	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11945]	Sample type/isolated from	mud from a sewage ditch
[Ref.: #11945]	Geographic location (country and/or sea, region)	Xishan mountain, Beijing
[Ref.: #11945]	Country	China
[Ref.: #11945]	Country ISO 3 Code	CHN
[Ref.: #11945]	Continent	Asia
[Ref.: #11945]	Geographic location	39.9908°/116.1730°

[Ref.: #57057]	Sample type/isolated from	Mud from a sewage ditch
[Ref.: #57057]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #57057]	Country	China
[Ref.: #57057]	Country ISO 3 Code	CHN
[Ref.: #57057]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Mud from a sewage ditch
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xishan mountain, Beijing
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #116781]	Sample type/isolated from	Environment, Mud from a sewage ditch
[Ref.: #116781]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #116781]	Country	China
[Ref.: #116781]	Country ISO 3 Code	CHN
[Ref.: #116781]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Wastewater
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_118618 (>99% sequence identity) for Nocardia from Microbeatlas

Aquatic Samples	3
Soil Samples	3
Animal Samples
Plant Samples	2
Total Samples	8

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11945]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116781]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11945]	Nocardia beijingensis strain DSM 44636 16S ribosomal RNA, partial sequence	NR_118618	1376	GenBank	95162 tax ID
[Ref.: #20218]	Nocardia beijingensis 16S ribosomal RNA gene, partial sequence	AF154129	1422	ENA	95162 tax ID	*
[Ref.: #20218]	Nocardia beijingensis strain DSM 44636 16S ribosomal RNA gene, partial sequence	JN041468	462	ENA	95162 tax ID	*
[Ref.: #20218]	Nocardia beijingensis strain DSM 44636 16S ribosomal RNA gene, partial sequence	KF410363	1376	ENA	95162 tax ID	*
[Ref.: #20218]	Nocardia beijingensis strain JCM 10666 16S ribosomal RNA gene, partial sequence	AY756543	606	ENA	95162 tax ID	*
[Ref.: #20218]	Nocardia beijingensis strain JCM 10666 16S ribosomal RNA gene, partial sequence	DQ659901	1414	ENA	95162 tax ID	*
[Ref.: #20218]	Nocardia beijingensis culture-collection CDC:W7678 16S ribosomal RNA gene, partial sequence	GQ217493	1441	ENA	95162 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardia beijingensis NBRC 16342	GCA_001612785	contig	GenBank	1210068 tax ID
[Ref.: #66792]	Nocardia beijingensis NBRC 16342	1210068.4	wgs	PATRIC	1210068 tax ID	*
[Ref.: #66792]	Nocardia beijingensis NBRC 16342	2731957728	draft	JGI IMG/M	1210068 tax ID	*

[Ref.: #67770]

GC-content

69 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardia beijingensis NBRC 16342 PATRIC: 1210068.4
[Ref.: #69481]	spore-forming	yes	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardia beijingensis NBRC 16342 PATRIC: 1210068.4
[Ref.: #69480]	motile	no	93.324	no
[Ref.: #69480]	gram-positive	yes	84.703	no
[Ref.: #69480]	anaerobic	no	98.966	yes
[Ref.: #69480]	aerobic	yes	91.659	no
[Ref.: #69480]	halophile	no	94.567	no
[Ref.: #69480]	spore-forming	yes	85.091	no
[Ref.: #69480]	glucose-util	yes	88.617	no
[Ref.: #69480]	flagellated	no	98.123	no
[Ref.: #69480]	thermophile	no	98.805	yes
[Ref.: #69480]	glucose-ferment	no	92.002	no

Availability in culture collections External links

[Ref.: #11945]

Culture collection no.

CCUG 46096, DSM 44636, AS 4.1521, CIP 107257, IFO 16342, JCM 10666, NBRC 16342, CGMCC 4.1521, IFM 10174, KCTC 19931, NCIMB 13870

[Ref.: #80036]

SI-ID 100822

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Beijinchromes A-D, Novel Aromatic Compounds Isolated from Nocardia beijingensis NBRC 16342.	Hoshino S, Awakawa T, Zhang H, Hayashi F, Abe I	Chem Pharm Bull (Tokyo)	10.1248/cpb.c19-00364	2019	*
Phylogeny	Nocardia xestospongiae sp. nov., isolated from a marine sponge in the Andaman Sea.	Thawai C, Rungjindamai N, Klanbut K, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001736	2017	*
Phylogeny	Nocardia niwae sp. nov., isolated from human pulmonary sources.	Moser BD, Klenk HP, Schumann P, Potter G, Lasker BA, Steigerwalt AG, Hinrikson HP, Brown JM	Int J Syst Evol Microbiol	10.1099/ijs.0.020370-0	2010	*
Phylogeny	Nocardia beijingensis sp. nov., a novel isolate from soil.	Wang L, Zhang Y, Lu Z, Shi Y, Liu Z, Maldonado L, Goodfellow M	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1783	2001	*
Phylogeny	Nocardia sputi sp. nov. isolated from the sputum of patients with pulmonary infection.	Wang X, Wei M, Pu J, Huang Y, Zhang S, Zhou J, Wang L, Yang J, Li Z, Zhu X	Int J Syst Evol Microbiol	10.1099/ijsem.0.005601	2022	*

References

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Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

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João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

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Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

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#116781 Collection of Institut Pasteur ; Curators of the CIP; CIP 107257
* These data were automatically processed and therefore are not curated

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Nocardia beijingensis NBRC 16342

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