Gordonia bronchialis (DSM 43341, 3411, N 661)

Name: Gordonia bronchialis (DSM 43341, 3411, N 661)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10543

Type strain

Strain Designation 3411, N 661, T2

Culture col. no. DSM 43341 3411 N 661 T2

NCBI tax ID(s) 2054

Special Collections DSMZ

History DSMZ <- M. Goodfellow, N 661 <- H. Mordarska, T2 <- M. Tsukamura, 3411 (Gordona bronchialis)

Links

Gordonia bronchialis 3411 is a bacterium that was isolated from sputum, pulmonary lesion.

Bacteria

Name and taxonomic classification

SI-ID 50245

DSM 43341

@ref 20215

Last LPSN update 2026-05-29 08:27:21

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Gordoniaceae

Genus Gordonia

Species Gordonia bronchialis

Full scientific name Gordonia bronchialis corrig. (Tsukamura 1971) Stackebrandt et al. 1989

Synonyms (2)

Rhodococcus bronchialis
"Gordona bronchialis"

BacDive ID	Other strains from **Gordonia bronchialis** (13)	Type strain
10542	G. bronchialis 3410, DSM 43247, ATCC 25592, JCM 3198, KCC ... (type strain)
10544	G. bronchialis M 287, DSM 43343
10545	G. bronchialis 50006, Gdf N885, DSM 46035, CIP 104658, IMET ...
10546	G. bronchialis 50017, DSM 46036, CIP 104659, IMET 7421, ...
10547	G. bronchialis 6520, Gdf N932, N 932, DSM 46088, CIP 104652, ...
104254	G. bronchialis STI07422(IMET), 3926, 50019, GdfN887, IMET ...
152442	G. bronchialis CCUG 46800
152451	G. bronchialis CCUG 46839
156191	G. bronchialis CCUG 60666
156998	G. bronchialis CCUG 68433
157743	G. bronchialis Turin10318_C4, DSM 107232
158983	G. bronchialis TO-C12a, DSM 110988
174467	G. bronchialis 112684, DSM 112684

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	93.65
125438	positive	90.351

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.613
125439	obligate aerobe	97.791

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Airways
#Host Body-Site	#Other	#Wound
#Host Body Product	#Fluids	#Sputum

Isolation

10966

Sample typesputum, pulmonary lesion

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10966	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2073584v1 assembly for Tsukamurella paurometabola FDAARGOS_1558	complete	GCA_020735845	2061.10	8075547067	2061	99.33
66792	Tsukamurella paurometabola strain FDAARGOS_1558	complete		2061.11		2061	98.97

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2073584v1 assembly for Tsukamurella paurometabola FDAARGOS_1558
NCBI: GCA_020735845

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.79	no
125439	gram_stain	BacteriaNetⓘ	positive	93.65	no
125439	motility	BacteriaNetⓘ	no	86.24	no
125439	spore_formation	BacteriaNetⓘ	no	67.65	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tsukamurella paurometabola strain FDAARGOS_1558
PATRIC: 2061.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.35	no
125438	anaerobic	anaerobicⓘ	no	97.78	no
125438	spore-forming	spore-formingⓘ	no	56.12	no
125438	aerobic	aerobicⓘ	yes	90.61	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

References

#10966	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43341
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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