Strain identifier
BacDive ID: 10543
Type strain: 
Species: Gordonia bronchialis
Strain Designation: 3411, N 661, T2
Strain history: <- M. Goodfellow, N 661 <- H. Mordarska, T2 <- M. Tsukamura, 3411 (Gordona bronchialis)
NCBI tax ID(s): 2054 (species)
General
@ref: 10966
BacDive-ID: 10543
DSM-Number: 43341
keywords: genome sequence, Bacteria
description: Gordonia bronchialis 3411 is a bacterium that was isolated from sputum, pulmonary lesion.
NCBI tax id
- NCBI tax id: 2054
- Matching level: species
strain history
- @ref: 10966
- history: <- M. Goodfellow, N 661 <- H. Mordarska, T2 <- M. Tsukamura, 3411 (Gordona bronchialis)
doi: 10.13145/bacdive10543.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Gordoniaceae
- genus: Gordonia
- species: Gordonia bronchialis
- full scientific name: Gordonia bronchialis corrig. (Tsukamura 1971) Stackebrandt et al. 1989
synonyms
@ref synonym 20215 Gordona bronchialis 20215 Rhodococcus bronchialis
@ref: 10966
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Gordoniaceae
genus: Gordonia
species: Gordonia bronchialis
full scientific name: Gordonia bronchialis (Tsukamura 1971) Stackebrandt et al. 1989 emend. Nouioui et al. 2018
strain designation: 3411, N 661, T2
type strain: no
Isolation, sampling and environmental information
isolation
- @ref: 10966
- sample type: sputum, pulmonary lesion
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Oral cavity and airways | #Airways |
| #Host Body-Site | #Other | #Wound |
| #Host Body Product | #Fluids | #Sputum |
Safety information
risk assessment
- @ref: 10966
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tsukamurella paurometabola strain FDAARGOS_1558 | 2061.11 | complete | patric | 2061 |
| 66792 | Tsukamurella paurometabola strain FDAARGOS_1558 | 2061.10 | complete | patric | 2061 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.665 | no |
| gram-positive | yes | 89.315 | no |
| anaerobic | no | 99.571 | no |
| aerobic | yes | 93.332 | no |
| halophile | no | 93.94 | no |
| spore-forming | no | 80.955 | no |
| glucose-util | yes | 93.065 | no |
| flagellated | no | 97.352 | no |
| thermophile | no | 98.988 | no |
| glucose-ferment | no | 90.858 | no |
External links
@ref: 10966
culture collection no.: DSM 43341
straininfo link
- @ref: 79819
- straininfo: 50245
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 10966 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43341) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43341 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 79819 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50245.1 | StrainInfo: A central database for resolving microbial strain identifiers |