Neisseria dentiae (DSM 19151, ATCC 700276, CIP 106968)

Name: Neisseria dentiae (DSM 19151, ATCC 700276, CIP 106968)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10491

Type strain

Strain Designation SH1/3848, SH1/3848 (V33)

Culture col. no. DSM 19151 ATCC 700276 CIP 106968 CCUG 53898 SH1/3848 1 more

NCBI tax ID(s) 194197

Special Collections DSMZ CCUG CIP

History DSMZ <- CIP <- B. G. Spratt; SH1/3848 CIP <- 2001, B.G. Spratt, Univ. Oxford, UK: strain SH1/3848 (V33) CIP <- 2001, B.G. Spratt, Univ. Oxford, UK: strain SH1/3848 (V33)

Links

Neisseria dentiae SH1/3848 is a microaerophile, Gram-negative, coccus-shaped bacterium that was isolated from dental plaque of cows.

Gram-negative coccus-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 69419

CIP 106968,ATCC 700276,DSM 19151,CCUG 53898,LMG 23015,NCTC 13012

@ref 20215

Last LPSN update 2026-05-29 08:27:20

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Neisseriaceae

Genus Neisseria

Species Neisseria dentiae

Full scientific name Neisseria dentiae Sneath and Barrett 1997

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
118909	negative	coccus-shaped
125438	negative			98.5

Colony morphology

118909

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7939	COLUMBIA BLOOD AGAR (DSMZ Medium 429)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
39627	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118909	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7939	positive	growth	37
39627	positive	growth	37
60066	positive	growth	37
118909	positive	growth	25-41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60066	microaerophile
118909	obligate aerobe
125439	obligate aerobe	97.072

Spore formation

@ref	Spore formation	Confidence
125439		99.546
125438		91.392

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
118909	606565 ChEBI	hippurate	-	hydrolysis
118909	17632 ChEBI	nitrate	-	builds gas from
118909	17632 ChEBI	nitrate	+	reduction
118909	17632 ChEBI	nitrate	+	respiration
118909	16301 ChEBI	nitrite	-	builds gas from
118909	16301 ChEBI	nitrite	+	reduction
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite
68377	35581 ChEBI	indole	from API NH
118909	35581 ChEBI	indole
118909		polysaccharides

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118909	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68377	alkaline phosphatase	-	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
118909	amylase	-
118909	beta-galactosidase	-	3.2.1.23
68377	beta-galactosidase	-	3.2.1.23	from API NH
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118909	caseinase	-	3.4.21.50
118909	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
118909	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
118909	gamma-glutamyltransferase	+	2.3.2.2
118909	gelatinase	-
118909	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
118909	lipase	-
68377	lipase	-		from API NH
68382	lipase (C 14)	-		from API zym
118909	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118909	ornithine decarboxylase	-	4.1.1.17
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
118909	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
118909	tween esterase	+
118909	urease	-	3.5.1.5
68377	urease	-	3.5.1.5	from API NH
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118909	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
7939	+	+	-	+	-	-	-	-	-	-	+/-	-	-
7939	+	+	-	+	-	-	-	-	-	-	+	-	-
7939	-	+	+	-	+	-	-	-	-	-	-	+/-	-
7939	-	+	+	-	+	-	-	-	-	-	-	+	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
118909	not determinedn.d.	+	+	-	+	-	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Oral cavity and airways	#Plaque
#Host Body-Site	#Oral cavity and airways	#Tooth

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7939	dental plaque of cows	United Kingdom	GBR	Europe
60066	Cow,dental plaque of the domestic cow
118909	Dairy cow, dental plaque

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7939	1	Risk group (German classification) According to TRBA 466
118909	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1405500v1 assembly for Neisseria dentiae DSM 19151	complete	GCA_014055005	194197.8	2989781543	194197	98.08
66792	ASM210859v1 assembly for Neisseria dentiae DSM 19151	contig	GCA_002108595	194197.3	8032007140	194197	37.48
124043	CCUG 53898 assembly for Neisseria dentiae CCUG 53898	contig	GCA_963395035	194197.12		194197	26.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7939	Neisseria dentiae V33 16S ribosomal RNA gene, partial sequence	AF487709	1341		194197

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1405500v1 assembly for Neisseria dentiae DSM 19151
BV-BRC: 194197.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.07	no
125439	gram_stain	BacteriaNetⓘ	negative	87.57	no
125439	motility	BacteriaNetⓘ	yes	47.21	no
125439	spore_formation	BacteriaNetⓘ	no	99.55	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Neisseria dentiae DSM 19151
NCBI: GCA_014055005.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	91.09	no
125438	aerobic	aerobicⓘ	no	52.20	no
125438	spore-forming	spore-formingⓘ	no	91.39	no
125438	thermophilic	thermophileⓘ	no	98.47	yes
125438	flagellated	motile2+ⓘ	no	81.64	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria.	Bennett JS, Jolley KA, Earle SG, Corton C, Bentley SD, Parkhill J, Maiden MCJ.	Microbiology (Reading)	10.1099/mic.0.056077-0	2012
	Characterization of capsule genes in non-pathogenic Neisseria species.	Clemence MEA, Maiden MCJ, Harrison OB.	Microb Genom	10.1099/mgen.0.000208	2018

References

#7939	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19151
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39627	; Curators of the CIP;
#60066	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53898
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#118909	Collection of Institut Pasteur ; Curators of the CIP; CIP 106968
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Neisseria dentiae (DSM 19151, ATCC 700276, CIP 106968)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API NH

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014055005

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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