Name: Neisseria bacilliformis DSM 23338
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10492

Type strain:

Species: Neisseria bacilliformis

Culture col. no.: DSM 23338, ATCC BAA-1200, CCUG 50858, MDA 2833

Strain history: <- CCUG; CCUG 50858 <- X. Y. Han, Univ. Texas; MDA2833

NCBI tax ID(s): 267212 (species)

SI-ID 214792

CCUG 50858, ATCC BAA-1200, DSM 23338

Other strains from Neisseria bacilliformis

N. bacilliformis CCUG 38963
N. bacilliformis CCUG 50611
N. bacilliformis CCUG 50859
N. bacilliformis CCUG 50860
N. bacilliformis CCUG 50861

Section

Neisseria bacilliformis DSM 23338 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from submandibular wound of a 53-year-old man.

Gram-negative
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Neisseriaceae*
	Genus	*Neisseria*
	Species	**Neisseria bacilliformis**
	Full Scientific Name (LPSN)	Neisseria bacilliformis Han et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #16803]

Type of hemolysis

gamma

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16803]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #16803]

Culture medium growth

[Ref.: #16803]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16803]

Culture medium composition

expand / minimize

[Ref.: #16803]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16803]

Culture medium growth

[Ref.: #16803]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16803]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16803]			growth	37 °C
[Ref.: #59021]			growth	37 °C

[Ref.: #16803]	Temperature range	mesophilic
[Ref.: #59021]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16803]	Oxygen tolerance	microaerophile
[Ref.: #59021]	Oxygen tolerance	microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %96
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68377]	D-fructose ChEBI	-	builds acid from	* from API NH
[Ref.: #68377]	maltose ChEBI	-	builds acid from	* from API NH
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	sucrose ChEBI	-	builds acid from	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH

	Metabolite production	Metabolite	Production
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH
[Ref.: #16803]	catalase	-	1.11.1.6
[Ref.: #16803]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]	proline-arylamidase	+	3.4.11.5	* from API NH
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #16803]	6268	-	+	-	-	-	-	-	+/-	-	-	+	+	-
[Ref.: #16803]	6198	+	-	-	-	-	-	-	-	-	+	+	-	-
[Ref.: #16803]	5674	-	+	-	-	-	-	-	-	-	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16803]	Sample type/isolated from	submandibular wound of a 53-year-old man
[Ref.: #16803]	Geographic location (country and/or sea, region)	Texas, Houston
[Ref.: #16803]	Country	USA
[Ref.: #16803]	Country ISO 3 Code	USA
[Ref.: #16803]	Continent	North America
[Ref.: #16803]	Geographic location	29.7499°/-95.3584°

[Ref.: #59021]	Sample type/isolated from	Human wound,53-yr-old man,submandibular,carcinoma
[Ref.: #59021]	Sampling date	2003
[Ref.: #59021]	Geographic location (country and/or sea, region)	TX,Houston
[Ref.: #59021]	Country	USA
[Ref.: #59021]	Country ISO 3 Code	USA
[Ref.: #59021]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	-
#Host Body-Site	#Other	#Wound
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY560519 (>99% sequence identity) for Kingella from Microbeatlas

Aquatic Samples	782
Soil Samples	389
Animal Samples	21492
Plant Samples	135
Total Samples	22798

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16803]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16803]	Neisseria bacilliformis 16S ribosomal RNA gene, partial sequence	AY560519	1489	ENA	888742 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Neisseria bacilliformis DSM 23338	GCA_014055025	complete	GenBank	267212 tax ID	*
[Ref.: #66792]	Neisseria bacilliformis ATCC BAA-1200	888742.3	wgs	PATRIC	888742 tax ID	*
[Ref.: #66792]	Neisseria bacilliformis strain DSM 23338	267212.13	complete	PATRIC	267212 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Neisseria bacilliformis DSM 23338 NCBI: GCA_014055025.1
[Ref.: #69481]	spore-forming	no	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Neisseria bacilliformis DSM 23338 NCBI: GCA_014055025.1
[Ref.: #69480]	motile	no	88.144	no
[Ref.: #69480]	flagellated	no	95.157	no
[Ref.: #69480]	gram-positive	no	98.419	no
[Ref.: #69480]	anaerobic	no	97.52	yes
[Ref.: #69480]	aerobic	no	95.334	yes
[Ref.: #69480]	halophile	no	76.819	no
[Ref.: #69480]	spore-forming	no	97.404	no
[Ref.: #69480]	thermophile	no	98.381	yes
[Ref.: #69480]	glucose-util	no	50.683	no
[Ref.: #69480]	glucose-ferment	no	89.059	no

Availability in culture collections External links

[Ref.: #16803]

Culture collection no.

DSM 23338, ATCC BAA-1200, CCUG 50858, MDA 2833

[Ref.: #79769]

SI-ID 214792

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Neisseria bacilliformis sp. nov. isolated from human infections.	Han XY, Hong T, Falsen E	J Clin Microbiol	10.1128/JCM.44.2.474-479.2006	2006	*
Phylogeny	Kingella pumchi sp. nov., an organism isolated from human vertebral puncture tissue.	Xiao M, Liu R, Du J, Liu R, Zhai L, Wang H, Yao S, Xu YC	Antonie Van Leeuwenhoek	10.1007/s10482-022-01786-w	2022	*

References

#16803

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23338

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#59021 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50858

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#79769

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID214792.1 )

* These data were automatically processed and therefore are not curated

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