Neisseria bacilliformis (DSM 23338, ATCC BAA-1200, CCUG 50858)

Name: Neisseria bacilliformis (DSM 23338, ATCC BAA-1200, CCUG 50858)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10492

Type strain

Culture col. no. DSM 23338 ATCC BAA-1200 CCUG 50858 MDA 2833

NCBI tax ID(s) 888742 267212

Special Collections DSMZ CCUG

History DSMZ <- CCUG; CCUG 50858 <- X. Y. Han, Univ. Texas; MDA2833

Links

Neisseria bacilliformis DSM 23338 is a microaerophile bacterium that was isolated from submandibular wound of a 53-year-old man.

microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 214792

CCUG 50858,ATCC BAA-1200,DSM 23338

@ref 20215

Last LPSN update 2026-05-29 08:27:20

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Neisseriaceae

Genus Neisseria

Species Neisseria bacilliformis

Full scientific name Neisseria bacilliformis Han et al. 2006

BacDive ID	Other strains from **Neisseria bacilliformis** (5)	Type strain
150081	N. bacilliformis CCUG 38963
153675	N. bacilliformis CCUG 50611
153750	N. bacilliformis CCUG 50859
153751	N. bacilliformis CCUG 50860
153752	N. bacilliformis CCUG 50861

Morphology

Cell morphology

@ref	Confidence	Gram stain
125439	99.352
125439	99.344	positive
125438	98.448	negative

Colony morphology

@ref	Type of hemolysis	Hemolysis ability
16803	gamma	0

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16803	BHI MEDIUM (DSMZ Medium 215)		Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
16803	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
16803	positive	growth	37
59021	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
16803	microaerophile
59021	microaerophile
125439	obligate aerobe	97.238

Spore formation

@ref	Spore formation	Confidence
125438		91.429

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	15824 ChEBI	D-fructose	-	builds acid from	from API NH
68377	17306 ChEBI	maltose	-	builds acid from	from API NH
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	17992 ChEBI	sucrose	-	builds acid from	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68377	alkaline phosphatase	-	3.1.3.1	from API NH
16803	catalase	-	1.11.1.6
16803	cytochrome-c oxidase	+	1.9.3.1
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	proline-arylamidase	+	3.4.11.5	from API NH
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68377	urease	-	3.5.1.5	from API NH

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
16803	-	+	-	-	-	-	-	+/-	-	-	+	+	-
16803	+	-	-	-	-	-	-	-	-	+	+	-	-
16803	-	+	-	-	-	-	-	-	-	-	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	-
#Host Body-Site	#Other	#Wound
#Host	#Human	#Male

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Sampling date
16803	submandibular wound of a 53-year-old man	Homo sapiens	Texas, Houston	USA	USA	North America	29.7499	-95.3584 29.7499/-95.3584
59021	Human wound,53-yr-old man,submandibular,carcinoma	Homo sapiens	TX,Houston	USA	USA	North America			2003

Taxonmaps

69479

Global distribution of 16S sequence AY560519 (>99% sequence identity) for Kingella from Microbeatlas

Aquatic Samples	782
Soil Samples	389
Animal Samples	21492
Plant Samples	135
Total Samples	22798

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16803	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1405502v1 assembly for Neisseria bacilliformis DSM 23338	complete	GCA_014055025	267212.13	8111604896	267212	98.5
124043	ASM19492v1 assembly for Neisseria bacilliformis ATCC BAA-1200	scaffold	GCA_000194925	888742.3	651324074	888742	63.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16803	Neisseria bacilliformis 16S ribosomal RNA gene, partial sequence	AY560519	1489		888742

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1405502v1 assembly for Neisseria bacilliformis DSM 23338
BV-BRC: 267212.13

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.24	no
125439	gram_stain	BacteriaNetⓘ	positive	99.34	no
125439	motility	BacteriaNetⓘ	no	99.35	no
125439	spore_formation	BacteriaNetⓘ	yes	43.85	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Neisseria bacilliformis DSM 23338
NCBI: GCA_014055025.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.45	no
125438	anaerobic	anaerobicⓘ	no	92.81	yes
125438	aerobic	aerobicⓘ	no	52.60	yes
125438	spore-forming	spore-formingⓘ	no	91.43	no
125438	thermophilic	thermophileⓘ	no	98.70	yes
125438	flagellated	motile2+ⓘ	no	85.55	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Metagenomic Analysis Reveals Neisseria bacilliformis Variation in the Early Childhood Caries Plaque Microbiome.	Xiao X, He S, He F, Wu X, Zheng Y.	Evid Based Complement Alternat Med	10.1155/2021/2774772	2021
	Phylogenomic analysis of the understudied Neisseriaceae species reveals a poly- and paraphyletic Kingella genus.	Morreale DP, St Geme Iii JW, Planet PJ.	Microbiol Spectr	10.1128/spectrum.03123-23	2023
Phylogeny	Confirmation of the Need for Reclassification of Neisseria mucosa and Neisseria sicca Using Average Nucleotide Identity Blast and Phylogenetic Analysis of Whole-Genome Sequencing: Hinted by Clinical Misclassification of a Neisseria mucosa Strain.	Jin Y, Xu H, Yao Q, Gu B, Wang Z, Wang T, Yu X, Lu Y, Zheng B, Zhang Y.	Front Microbiol	10.3389/fmicb.2021.780183	2021
Phylogeny	DNA Phosphorothioate Modifications Are Widely Distributed in the Human Microbiome.	Sun Y, Kong L, Wu G, Cao B, Pang X, Deng Z, Dedon PC, Zhang C, You D.	Biomolecules	10.3390/biom10081175	2020
Pathogenicity	A Natural Mouse Model for Neisseria Colonization.	Ma M, Powell DA, Weyand NJ, Rhodes KA, Rendon MA, Frelinger JA, So M.	Infect Immun	10.1128/iai.00839-17	2018
Genetics	Closely related type II-C Cas9 orthologs recognize diverse PAMs.	Wei J, Hou L, Liu J, Wang Z, Gao S, Qi T, Gao S, Sun S, Wang Y.	Elife	10.7554/elife.77825	2022
Phylogeny	Dialects of the DNA uptake sequence in Neisseriaceae.	Frye SA, Nilsen M, Tonjum T, Ambur OH.	PLoS Genet	10.1371/journal.pgen.1003458	2013
Phylogeny	A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria.	Bennett JS, Jolley KA, Earle SG, Corton C, Bentley SD, Parkhill J, Maiden MCJ.	Microbiology (Reading)	10.1099/mic.0.056077-0	2012
	Characterization of capsule genes in non-pathogenic Neisseria species.	Clemence MEA, Maiden MCJ, Harrison OB.	Microb Genom	10.1099/mgen.0.000208	2018
Phylogeny	Neisseria bacilliformis sp. nov. isolated from human infections.	Han XY, Hong T, Falsen E	J Clin Microbiol	10.1128/JCM.44.2.474-479.2006	2006
Phylogeny	Kingella pumchi sp. nov., an organism isolated from human vertebral puncture tissue.	Xiao M, Liu R, Du J, Liu R, Zhai L, Wang H, Yao S, Xu YC	Antonie Van Leeuwenhoek	10.1007/s10482-022-01786-w	2022

References

#16803	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23338
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#59021	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50858
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68377	Automatically annotated from API NH .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Neisseria bacilliformis (DSM 23338, ATCC BAA-1200, CCUG 50858)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014055025

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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