Strain identifier

BacDive ID: 10491

Type strain: Yes

Species: Neisseria dentiae

Strain Designation: SH1/3848, SH1/3848 (V33)

Strain history: CIP <- 2001, B.G. Spratt, Univ. Oxford, UK: strain SH1/3848 (V33)

NCBI tax ID(s): 194197 (species)

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General

@ref: 7939

BacDive-ID: 10491

DSM-Number: 19151

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Neisseria dentiae SH1/3848 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from dental plaque of cows.

NCBI tax id

  • NCBI tax id: 194197
  • Matching level: species

strain history

@refhistory
7939<- CIP <- B. G. Spratt; SH1/3848
396272001, B.G. Spratt, Univ. Oxford, UK: strain SH1/3848 (V33)
118909CIP <- 2001, B.G. Spratt, Univ. Oxford, UK: strain SH1/3848 (V33)

doi: 10.13145/bacdive10491.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Neisseria
  • species: Neisseria dentiae
  • full scientific name: Neisseria dentiae Sneath and Barrett 1997

@ref: 7939

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Neisseria

species: Neisseria dentiae

full scientific name: Neisseria dentiae Sneath and Barrett 1997

strain designation: SH1/3848, SH1/3848 (V33)

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.99
118909negativecoccus-shapedno

colony morphology

  • @ref: 118909

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7939COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
39627MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118909CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
7939positivegrowth37mesophilic
39627positivegrowth37mesophilic
60066positivegrowth37mesophilic
118909positivegrowth25-41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
60066microaerophile
118909obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
118909606565hippurate-hydrolysis
11890917632nitrate-builds gas from
11890917632nitrate+reduction
11890916301nitrite-builds gas from
11890916301nitrite+reduction
11890917632nitrate+respiration
6837717634D-glucose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
11890935581indoleno
118909polysaccharidesno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
118909oxidase+
118909beta-galactosidase-3.2.1.23
118909alcohol dehydrogenase-1.1.1.1
118909gelatinase-
118909amylase-
118909DNase-
118909caseinase-3.4.21.50
118909catalase+1.11.1.6
118909tween esterase+
118909gamma-glutamyltransferase+2.3.2.2
118909lecithinase-
118909lipase-
118909lysine decarboxylase-4.1.1.18
118909ornithine decarboxylase-4.1.1.17
118909urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118909-+++-+----++--------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
7939++-+------+/---
7939++-+------+--
7939-++-+------+/--
7939-++-+------+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118909++-+---+----+-----++-------------+---------------+------+---+--------------+---++-----------------+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7939dental plaque of cowsUnited KingdomGBREurope
60066Cow,dental plaque of the domestic cow
118909Dairy cow, dental plaque

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Oral cavity and airways#Plaque
#Host Body-Site#Oral cavity and airways#Tooth

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
79391Risk group (German classification)
1189091Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7939
  • description: Neisseria dentiae V33 16S ribosomal RNA gene, partial sequence
  • accession: AF487709
  • length: 1341
  • database: ena
  • NCBI tax ID: 194197

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Neisseria dentiae DSM 19151GCA_014055005completencbi194197
66792Neisseria dentiae DSM 19151GCA_002108595contigncbi194197
66792Neisseria dentiae strain DSM 19151194197.8completepatric194197
66792Neisseria dentiae strain DSM 19151194197.3wgspatric194197

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.69no
flagellatedno94.055no
gram-positiveno98.389no
anaerobicno98.051yes
aerobicno78.177yes
halophileno76.124no
spore-formingno97.592no
thermophileno99.457yes
glucose-utilyes76.186no
glucose-fermentno87.012no

External links

@ref: 7939

culture collection no.: DSM 19151, ATCC 700276, CIP 106968, CCUG 53898

straininfo link

  • @ref: 79768
  • straininfo: 69419

Reference

@idauthorscataloguedoi/urltitle
7939Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19151)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19151
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39627Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19157
60066Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 53898)https://www.ccug.se/strain?id=53898
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
79768Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID69419.1StrainInfo: A central database for resolving microbial strain identifiers
118909Curators of the CIPCollection of Institut Pasteur (CIP 106968)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106968