Name: Myxococcus stipitatus Mx s8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10096

Type strain:

Species: Myxococcus stipitatus

Strain Designation: Mx s8

Culture col. no.: DSM 14675, JCM 12634

Strain history: DSM 14675 <-- H. Reichenbach Mx s 8.

NCBI tax ID(s): 1278073 (strain), 83455 (species)

SI-ID 143378

DSM 14675

Other strains from Myxococcus stipitatus

Section

Myxococcus stipitatus Mx s8 is a mesophilic, Gram-negative bacterium that builds a fruiting body and was isolated from soil.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Myxococcaceae*
	Genus	*Myxococcus*
	Species	**Myxococcus stipitatus**
	Full Scientific Name (LPSN)	Myxococcus stipitatus Thaxter 1897 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.851

[Ref.: #18281]	Multicellular complex forming ability	yes *
[Ref.: #18281]	Multicellular complex name	fruiting body *

Multimedia content

[Ref.: #5476]

Caption:

fruiting bodies on agar medium 9

[Ref.: #5476]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5476]

Culture medium

CY-AGAR (DSMZ Medium 67)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #5476]

Culture medium composition

expand / minimize

[Ref.: #5476]

Culture medium

VY/2 AGAR (DSMZ Medium 9)

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Culture medium growth

[Ref.: #5476]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5476]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5476]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #5476]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %98.807

[Ref.: #5476]

Name of produced compound

phenylamide

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5476]	Sample type/isolated from	soil
[Ref.: #5476]	Geographic location (country and/or sea, region)	Iguacu
[Ref.: #5476]	Country	Brazil
[Ref.: #5476]	Country ISO 3 Code	BRA
[Ref.: #5476]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Lateritic soil sample collected near the Iguaçu waterfalls
[Ref.: #67770]	Country	Brazil
[Ref.: #67770]	Country ISO 3 Code	BRA
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ768118 (>99% sequence identity) for Myxococcus from Microbeatlas

Aquatic Samples	133
Soil Samples	976
Animal Samples	96
Plant Samples	173
Total Samples	1378

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5476]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5476]	Myxococcus stipitatus strain DSM 14675 16S ribosomal RNA gene, partial sequence	DQ768118	1491	ENA	83455 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Myxococcus stipitatus DSM 14675	GCA_000331735	complete	GenBank	1278073 tax ID	*
[Ref.: #66792]	Myxococcus stipitatus DSM 14675	1278073.3	complete	PATRIC	1278073 tax ID	*
[Ref.: #66792]	Myxococcus stipitatus DSM 14675	2521172697	complete	JGI IMG/M	1278073 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Myxococcus stipitatus DSM 14675 DSM 14675 NCBI: GCA_000331735.1
[Ref.: #69481]	spore-forming	yes	79	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Myxococcus stipitatus DSM 14675 DSM 14675 NCBI: GCA_000331735.1
[Ref.: #69480]	motile	no	53.063	no
[Ref.: #69480]	flagellated	no	85.748	no
[Ref.: #69480]	gram-positive	no	95.306	no
[Ref.: #69480]	anaerobic	no	97.568	no
[Ref.: #69480]	aerobic	yes	80.096	no
[Ref.: #69480]	halophile	no	89.964	no
[Ref.: #69480]	spore-forming	no	78.329	no
[Ref.: #69480]	thermophile	no	98.965	no
[Ref.: #69480]	glucose-util	yes	81.316	no
[Ref.: #69480]	glucose-ferment	no	88.909	no

Availability in culture collections External links

[Ref.: #5476]

Culture collection no.

DSM 14675, JCM 12634

[Ref.: #79474]

SI-ID 143378

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Opinions 100, 101 and 102.	Arahal DR	Int J Syst Evol Microbiol	10.1099/ijsem.0.004390	2020	*
Metabolism	Genetic and Functional Analyses of the DKxanthene Biosynthetic Gene Cluster from Myxococcus stipitatus DSM 14675.	Hyun H, Lee S, Lee JS, Cho K	J Microbiol Biotechnol	10.4014/jmb.1802.02045	2018	*
Metabolism	Identification of the Phenalamide Biosynthetic Gene Cluster in Myxococcus stipitatus DSM 14675.	Park S, Hyun H, Lee JS, Cho K	J Microbiol Biotechnol	10.4014/jmb.1603.03023	2016	*
Genetics	Complete genome sequence of Myxococcus stipitatus strain DSM 14675, a fruiting myxobacterium.	Huntley S, Kneip S, Treuner-Lange A, Sogaard-Andersen L	Genome Announc	10.1128/genomeA.00100-13	2013	*
Phylogeny	Emended descriptions of the genera Myxococcus and Corallococcus, typification of the species Myxococcus stipitatus and Myxococcus macrosporus and a proposal that they be represented by neotype strains. Request for an Opinion.	Lang E, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.003566-0	2009	*

References

#5476

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14675

#18281

Reichenbach, H.: Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ . Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#79474

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID143378.1 )

* These data were automatically processed and therefore are not curated

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Myxococcus stipitatus DSM 14675 DSM 14675

Myxococcus stipitatus DSM 14675 DSM 14675

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