Name: Staphylococcus schweitzeri FSA084
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130707

Type strain:

Species: Staphylococcus schweitzeri

Strain Designation: FSA084

Culture col. no.: CCUG 70918, DSM 28300, CIP 111114, JCM 31983, SSI 89.004, NCTC 13712

Strain history: CIP <- 2016, DSMZ <- F Schaumburg, Münster Univ. Hosp., Münster, Germany: strain FSA084

NCBI tax ID(s): 1654388 (species)

SI-ID 404071

DSM 28300, CIP 111114

Section

Staphylococcus schweitzeri FSA084 is an aerobe, mesophilic, Gram-positive animal pathogen that was isolated from nasal swab from a red-tailed monkey within 12 h after the death of the animal.

Gram-positive
aerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus schweitzeri**
	Full Scientific Name (LPSN)	Staphylococcus schweitzeri Tong et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #122517]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #122517]	Cell shape	coccus-shaped

[Ref.: #122517]	Motility	no

[Ref.: #21819]	Type of hemolysis	beta
[Ref.: #21819]	Hemolysis ability	1
[Ref.: #21819]	Incubation period	1-2 days

[Ref.: #63764]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21819]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #21819]

Culture medium growth

[Ref.: #21819]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21819]

Culture medium composition

expand / minimize

[Ref.: #21819]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #21819]

Culture medium growth

[Ref.: #21819]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21819]

Culture medium composition

expand / minimize

[Ref.: #122517]

Culture medium

CIP Medium 72

[Ref.: #122517]

Culture medium growth

[Ref.: #122517]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #21819]	growth	37 °C
[Ref.: #63764]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #21819]	Temperature range	mesophilic
[Ref.: #63764]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63764]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.543

[Ref.: #67770]

Observation

quinones: MK-8, MK-9, MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	arginine ChEBI	+	hydrolysis	* from API ID32STA, API STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68378]	D-fructose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68378]	D-glucose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68378]	D-mannitol ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	D-mannitol ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68378]	D-mannose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	D-mannose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68378]	D-xylose ChEBI	-	builds acid from	* from API STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68378]	lactose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	lactose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68378]	maltose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	maltose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68378]	melibiose ChEBI	-	builds acid from	* from API STA
[Ref.: #68378]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API STA
[Ref.: #68378]	N-acetylglucosamine ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	N-acetylglucosamine ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA, API STA
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68378]	raffinose ChEBI	-	builds acid from	* from API STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68378]	sucrose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	sucrose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68378]	trehalose ChEBI	+	builds acid from	* from API STA
[Ref.: #68375]	trehalose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	turanose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	+	hydrolysis	* from API ID32STA, API STA
[Ref.: #68378]	xylitol ChEBI	-	builds acid from	* from API STA
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68375]		novobiocin ChEBI	yes	1.8	µg	* from API ID32STA

	Metabolite production	Metabolite	Production
[Ref.: #68378]		acetoin ChEBI	yes	* from API STA, API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68378]		acetoin ChEBI	+	* from API STA, API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68378]	alkaline phosphatase	+	3.1.3.1	* from API STA, API ID32STA
[Ref.: #68378]	arginine dihydrolase	+	3.5.3.6	* from API STA, API ID32STA
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	-	3.2.1.31	* from API ID32STA
[Ref.: #21819]	catalase	+	1.11.1.6
[Ref.: #21819]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #68375]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API ID32STA
[Ref.: #68378]	urease	+	3.5.1.5	* from API STA, API ID32STA
	Only first 10 entries are displayed. Click here to see all.

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #21819]	6127	+	+	-	-	+	+	+	+	+	+	+	-	-	-	+	+	-	-	+	-	-	+	+	+	-	-

API® STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from maltoseMAL	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from D-mannitolMAN	Acid from xylitolXLT	Acid from melibioseMEL	Reduction of nitrateNIT	Alkaline phosphatasePAL	Acetoin production (Voges Proskauer test)VP	Acid from raffinoseRAF	Acid from D-xyloseXYL	Acid from sucroseSAC	Acid from methyl-alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Arginine dihydrolaseADH	Urease/urea hydrolysisURE	Resistance to lysostaphin (EC 3.4.24.75)LSTR
[Ref.: #21819]	240	-	+	+	+	+	+	+	+	-	-	+	+	+	-	-	+	-	+	+	+	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21819]	Sample type/isolated from	nasal swab from a red-tailed monkey (Cercopithecus ascanius) within 12 h after the death of the animal
[Ref.: #21819]	Host species	Cercopithecus ascanius
[Ref.: #21819]	Geographic location (country and/or sea, region)	Moyen Ogooué
[Ref.: #21819]	Country	Gabon
[Ref.: #21819]	Country ISO 3 Code	GAB
[Ref.: #21819]	Continent	Africa
[Ref.: #21819]	Geographic location	-0.8170°/9.9830°

[Ref.: #63764]	Sample type/isolated from	Nose culture,non human primate(Cercophithecus asc.
[Ref.: #63764]	Sampling date	2010
[Ref.: #63764]	Country	Gabon
[Ref.: #63764]	Country ISO 3 Code	GAB
[Ref.: #63764]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Nares of a red-tailed monkey (Cercopithecus ascanius)
[Ref.: #67770]	Host species	Cercopithecus ascanius
[Ref.: #67770]	Country	Gabon
[Ref.: #67770]	Country ISO 3 Code	GAB
[Ref.: #67770]	Continent	Africa

[Ref.: #122517]	Sample type/isolated from	Nasal swab from a red-tailed monkey, Cercopithecus ascanius
[Ref.: #122517]	Geographic location (country and/or sea, region)	Moyen Ogooué
[Ref.: #122517]	Country	Gabon
[Ref.: #122517]	Country ISO 3 Code	GAB
[Ref.: #122517]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Swab
#Host	#Mammals	#Primates
#Host Body-Site	#Organ	#Nose

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF678963 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	991
Soil Samples	353
Animal Samples	21663
Plant Samples	192
Total Samples	23199

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21819]	Pathogenicity (animal)	yes
[Ref.: #21819]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122517]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Staphylococcus schweitzeri strain DSM 28300 16S ribosomal RNA gene, partial sequence	MF678963	1283	ENA	1654388 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Staphylococcus schweitzeri DSM 28300	GCA_002902405	scaffold	GenBank	1654388 tax ID
[Ref.: #67770]	Staphylococcus schweitzeri FSA084	GCA_000751255	contig	GenBank	1654388 tax ID
[Ref.: #66792]	Staphylococcus schweitzeri DSM 28300	GCA_014877095	contig	GenBank	1654388 tax ID	*
[Ref.: #66792]	Staphylococcus schweitzeri strain DSM 28300	1654388.8	wgs	PATRIC	1654388 tax ID	*
[Ref.: #66792]	Staphylococcus schweitzeri strain DSM 28300	1654388.6	wgs	PATRIC	1654388 tax ID	*
[Ref.: #66792]	Staphylococcus schweitzeri strain NCTC13712	1654388.7	complete	PATRIC	1654388 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Staphylococcus schweitzeri NCTC13712 NCBI: GCA_900636685.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus schweitzeri NCTC13712 NCBI: GCA_900636685.1
[Ref.: #69480]	flagellated	no	91.163	no
[Ref.: #69480]	gram-positive	yes	87.219	no
[Ref.: #69480]	anaerobic	no	99.572	no
[Ref.: #69480]	aerobic	yes	91.363	yes
[Ref.: #69480]	halophile	yes	93.542	no
[Ref.: #69480]	spore-forming	no	93.214	no
[Ref.: #69480]	thermophile	no	99.677	yes
[Ref.: #69480]	glucose-util	yes	87.946	no
[Ref.: #69480]	motile	no	90.913	no
[Ref.: #69480]	glucose-ferment	yes	84.407	yes

Availability in culture collections External links

[Ref.: #21819]

Culture collection no.

CCUG 70918, DSM 28300, CIP 111114, JCM 31983, SSI 89.004, NCTC 13712

[Ref.: #89214]

SI-ID 404071

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novel staphylococcal species that form part of a Staphylococcus aureus-related complex: the non-pigmented Staphylococcus argenteus sp. nov. and the non-human primate-associated Staphylococcus schweitzeri sp. nov.	Tong SYC, Schaumburg F, Ellington MJ, Corander J, Pichon B, Leendertz F, Bentley SD, Parkhill J, Holt DC, Peters G, Giffard PM	Int J Syst Evol Microbiol	10.1099/ijs.0.062752-0	2014	*
Pathogenicity	Staphylococcus argenteus and Staphylococcus schweitzeri are cytotoxic to human cells in vitro due to high expression of alpha-hemolysin Hla.	Johansson C, Rautelin H, Kaden R	Virulence	10.1080/21505594.2019.1620062	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21819

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28300

#63764 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 70918

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68375

Automatically annotated from API ID32STA .

#68378

Automatically annotated from API STA .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89214

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404071.1 )

#122517 Collection of Institut Pasteur ; Curators of the CIP; CIP 111114
* These data were automatically processed and therefore are not curated

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Staphylococcus schweitzeri NCTC13712

Staphylococcus schweitzeri NCTC13712

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