Name: Streptococcus loxodontisalivarius DSM 27382
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130708

Type strain:

Species: Streptococcus loxodontisalivarius

Culture col. no.: DSM 27382, JCM 19287, CCUG 70865, NUM 6304

Strain history: M. Saito and M. Hirasawa; Nihon Univ. Sch. of Dent. at Matsudo, Japan; NUM 6304.

NCBI tax ID(s): 1349415 (species)

SI-ID 403635

DSM 27382

Special Collections

Section

Streptococcus loxodontisalivarius DSM 27382 is a microaerophile, Gram-positive bacterium that was isolated from elephant oral cavity.

Gram-positive
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus loxodontisalivarius**
	Full Scientific Name (LPSN)	Streptococcus loxodontisalivarius Saito et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #21941]	Type of hemolysis	alpha
[Ref.: #21941]	Hemolysis ability	1
[Ref.: #21941]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21941]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #21941]

Culture medium growth

[Ref.: #21941]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21941]

Culture medium composition

expand / minimize

[Ref.: #21941]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #21941]

Culture medium growth

[Ref.: #21941]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21941]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21941]	growth	37 °C
[Ref.: #63757]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21941]	Oxygen tolerance	microaerophile
[Ref.: #63757]	Oxygen tolerance	microaerophile

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	arginine ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	hippurate ChEBI	+	hydrolysis	* from API rID32STR
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	lactose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	maltose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	pullulan ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	raffinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	trehalose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68381]		acetoin ChEBI	yes	* from API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68381]		acetoin ChEBI	+	* from API rID32STR

	Enzyme	Enzyme activity	EC number
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #68381]	alkaline phosphatase	-	3.1.3.1	* from API rID32STR
[Ref.: #68381]	alpha-galactosidase	-	3.2.1.22	* from API rID32STR
[Ref.: #68381]	arginine dihydrolase	-	3.5.3.6	* from API rID32STR
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR
[Ref.: #68381]	beta-glucosidase	+	3.2.1.21	* from API rID32STR
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #21941]	catalase	-	1.11.1.6
[Ref.: #21941]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68381]	glycyl tryptophan arylamidase	-		* from API rID32STR
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #21941]	10616	-	+	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	+	-	-	-	-	+	-	+	+	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21941]	Sample type/isolated from	elephant oral cavity
[Ref.: #21941]	Geographic location (country and/or sea, region)	Ichihara Elephant Kingdom, Chiba
[Ref.: #21941]	Country	Japan
[Ref.: #21941]	Country ISO 3 Code	JPN
[Ref.: #21941]	Continent	Asia

[Ref.: #63757]	Sample type/isolated from	Saliva,African elephant

[Ref.: #67770]	Sample type/isolated from	Elephant oral cavities
* marker position based on {}

Isolation sources categories

#Host	#Mammals	-
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21941]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptococcus loxodontisalivarius JCM 19287 gene for 16S rRNA, partial sequence	LC589217	1485	GenBank ENA	1349415 tax ID
[Ref.: #21941]	Streptococcus loxodontisalivarius gene for 16S ribosomal RNA, partial sequence	AB828326	1506	GenBank ENA	1349415 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptococcus loxodontisalivarius DSM 27382	GCA_016908645	contig	GenBank ENA	1349415 tax ID	*
[Ref.: #66792]	Streptococcus loxodontisalivarius strain DSM 27382	1349415.3	wgs	PATRIC	1349415 tax ID	*
[Ref.: #66792]	Streptococcus loxodontisalivarius DSM 27382	2901175613	draft	JGI IMG/M	1349415 tax ID	*

[Ref.: #21941]

GC-content

38.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptococcus loxodontisalivarius strain DSM 27382 PATRIC: 1349415.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptococcus loxodontisalivarius strain DSM 27382 PATRIC: 1349415.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.929	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.502	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.467	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	96	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.178	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

[Ref.: #21941]

Culture collection no.

DSM 27382, JCM 19287, CCUG 70865, NUM 6304

[Ref.: #89215]

SI-ID 403635

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptococcus loxodontisalivarius sp. nov. and Streptococcus saliviloxodontae sp. nov., isolated from oral cavities of elephants.	Saito M, Shinozaki-Kuwahara N, Hirasawa M, Takada K	Int J Syst Evol Microbiol	10.1099/ijs.0.063263-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21941

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27382

#63757 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 70865

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68381

Automatically annotated from API rID32STR .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89215

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403635.1 )

* These data were automatically processed and therefore are not curated

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Streptococcus loxodontisalivarius strain DSM 27382

Streptococcus loxodontisalivarius strain DSM 27382

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