Name: Picrophilus oshimae DSM 9789
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11900

Type strain:

Species: Picrophilus oshimae

Culture col. no.: DSM 9789, JCM 10054, KAW 2/2, ATCC 700036

Strain history: DSM 9789 <-- W. Zillig KAW2/2.

NCBI tax ID(s): 1122961 (strain), 46632 (species)

SI-ID 45393

ATCC 700036, DSM 9789, JCM 10054

Special Collections

DSMZ
JCM

Section

Picrophilus oshimae DSM 9789 is an archaeon that was isolated from solfataric field.

16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Thermoplasmata*
	Order	*Thermoplasmatales*
	Family	*Picrophilaceae*
	Genus	*Picrophilus*
	Species	**Picrophilus oshimae**
	Full Scientific Name (LPSN)	Picrophilus oshimae Schleper et al. 1996

Synonym

Picrophilus torridus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3735]

Culture medium

SULFOLOBUS MEDIUM (DSMZ Medium 88)

[Ref.: #3735]

Culture medium growth

[Ref.: #3735]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3735]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3735]			growth	55 °C
[Ref.: #67770]			growth	55 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3735]	Sample type/isolated from	solfataric field
[Ref.: #3735]	Geographic location (country and/or sea, region)	Hokkaido, Kawayu
[Ref.: #3735]	Country	Japan
[Ref.: #3735]	Country ISO 3 Code	JPN
[Ref.: #3735]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Dry, hot soil in the vicinity of Kawayu
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hokkaido
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Volcanic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X84901 (>99% sequence identity) for Picrophilus from Microbeatlas

Aquatic Samples	38
Soil Samples	1
Animal Samples
Plant Samples	1
Total Samples	40

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3735]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3735]	P.oshimae 16S rRNA gene	X84901	1470	GenBank ENA	46632 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Picrophilus oshimae DSM 9789	GCA_900176435	contig	GenBank ENA	1122961 tax ID
[Ref.: #66792]	Picrophilus oshimae DSM 9789	2579779151	draft	JGI IMG/M	1122961 tax ID	*
[Ref.: #66792]	Picrophilus oshimae DSM 9789 strain DSM 9789	1122961.3	wgs	PATRIC	1122961 tax ID	*

[Ref.: #3735]

GC-content

36 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #3735]

Culture collection no.

DSM 9789, JCM 10054, KAW 2/2, ATCC 700036

[Ref.: #81115]

SI-ID 45393

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidiplasma aeolicum gen. nov., sp. nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov.	Golyshina OV, Yakimov MM, Lunsdorf H, Ferrer M, Nimtz M, Timmis KN, Wray V, Tindall BJ, Golyshin PN	Int J Syst Evol Microbiol	10.1099/ijs.0.009639-0	2009	*

References

#3735

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9789

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81115

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45393.1 )

* These data were automatically processed and therefore are not curated

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