Name: Komagataeibacter oboediens DSM 11826
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 91

Type strain:

Species: Komagataeibacter oboediens

Culture col. no.: DSM 11826, JCM 16937, LMG 18849, NCIMB 13557, LTH 2460, BCC 36445, BCRC 17057, CIP 105763

Strain history: DSM 11826 <-- S. J. Sokollek and W. P. Hammes LTH 2460.

NCBI tax ID(s): 1307938 (strain), 65958 (species)

Section

Komagataeibacter oboediens DSM 11826 is a mesophilic bacterium that was isolated from industrial red wine vinegar fermentation.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Komagataeibacter*
	Species	**Komagataeibacter oboediens**
	Full Scientific Name (PNU)	Komagataeibacter oboediens (Sokollek et al. 1998) Yamada et al. 2013

	Synonym	"Komagatabacter* oboediens"*
	Synonym	Gluconacetobacter oboediens
	Synonym	Acetobacter oboediens

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4506]

Culture medium

SABOURAND GLUCOSE MEDIUM (DSMZ Medium 1429)

[Ref.: #4506]

Culture medium growth

[Ref.: #4506]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #4506]

Culture medium composition

expand / minimize

[Ref.: #4506]

Culture medium

RAE MEDIUM (DSMZ Medium 848)

[Ref.: #4506]

Culture medium growth

[Ref.: #4506]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #4506]

Culture medium composition

expand / minimize

[Ref.: #39823]

Culture medium

MEDIUM 289 - for Acetobacter intermedius

[Ref.: #39823]

Culture medium growth

[Ref.: #39823]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #4506]	growth	30 °C
[Ref.: #39823]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #4506]	Temperature range	mesophilic
[Ref.: #39823]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4506]	Sample type/isolated from	industrial red wine vinegar fermentation
[Ref.: #4506]	Geographic location (country and/or sea, region)	Southern Part of Germany
[Ref.: #4506]	Country	Germany
[Ref.: #4506]	Country ISO 3 Code	DEU
[Ref.: #4506]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Submerged cider vinegar fermentation at a factory
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Engineered	#Industrial	-
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF794005 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	523
Soil Samples	662
Animal Samples	2327
Plant Samples	555
Total Samples	4067

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4506]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Gluconacetobacter oboediens gene for 16S rRNA, partial sequence, strain: JCM 16937	AB645733	1411	ENA	65958 tax ID	*
[Ref.: #20218]	Gluconacetobacter oboediens strain LMG 18849 16S ribosomal RNA gene, partial sequence	JF794004	1352	ENA	65958 tax ID	*
[Ref.: #20218]	Gluconacetobacter oboediens strain DSM 11826 16S ribosomal RNA gene, partial sequence	JF794005	1352	ENA	65958 tax ID	*
[Ref.: #20218]	Gluconacetobacter oboediens strain LMG 18849T 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	KC478455	740	ENA	65958 tax ID	*
[Ref.: #20218]	Gluconacetobacter oboediens strain DSM 11826T 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	KC478456	746	ENA	65958 tax ID	*
[Ref.: #4506]	Acetobacter oboediens 16S ribosomal RNA gene	AJ001631	1482	ENA	65958 tax ID
[Ref.: #4506]	Gluconacetobacter oboediens gene for 16S rRNA, partial sequence, strain: DSM 11826	AB205221	1449	ENA	65958 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Komagataeibacter oboediens strain LMG 18849	65958.4	wgs	PATRIC	65958 tax ID	*
[Ref.: #66792]	Komagataeibacter oboediens LMG 18849	2846433441	draft	JGI IMG/M	65958 tax ID	*
[Ref.: #67770]	Komagataeibacter oboediens LMG 18849	GCA_003207815	contig	GenBank	65958 tax ID
[Ref.: #66792]	Acidobacteria bacterium CS2-C035	GCA_011773095	scaffold	PATRIC	1978231 tax ID	*

[Ref.: #4506]

GC-content

59.9 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #4506]

Culture collection no.

DSM 11826, JCM 16937, LMG 18849, NCIMB 13557, LTH 2460, BCC 36445, BCRC 17057, CIP 105763

[Ref.: #20218]

Associated Passport(s) in StrainInfo

48125, 869140, 48124, 346575

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Acetobacter oboediens sp. nov. and Acetobacter pomorum sp. nov., two new species isolated from industrial vinegar fermentations.	Sokollek SJ, Hertel C, Hammes WP	Int J Syst Bacteriol	10.1099/00207713-48-3-935	1998	*

References

#4506

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11826

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39823 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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