Name: Komagataeibacter oboediens DSM 11826
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 91

Type strain:

Species: Komagataeibacter oboediens

Culture col. no.: DSM 11826, JCM 16937, LMG 18849, NCIMB 13557, LTH 2460, BCC 36445, BCRC 17057, CIP 105763

Strain history: CIP <- 1998, G. Schüller, Univ. Hohenheim, Stuttgart, Germany: strain LTH 2460

NCBI tax ID(s): 1307938 (strain), 65958 (species)

SI-ID 12782

LMG 18849, DSM 11826, CIP 105763, NCIMB 13557, BCRC 17057, CCRC 17057, BCC 36445, JCM 16937, TBRC 1036

Special Collections

Section

Komagataeibacter oboediens DSM 11826 is an obligate aerobe, Gram-negative bacterium that was isolated from industrial red wine vinegar fermentation.

Gram-negative
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Komagataeibacter*
	Species	**Komagataeibacter oboediens**
	Full Scientific Name (LPSN)	Komagataeibacter oboediens (Sokollek et al. 1998) Yamada et al. 2013

	Synonym	"Komagatabacter* oboediens"*
	Synonym	Gluconacetobacter oboediens
	Synonym	Acetobacter oboediens

Information on morphological and physiological properties Morphology

[Ref.: #121376]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.333

[Ref.: #121376]	Cell shape	rod-shaped

[Ref.: #121376]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4506]

Culture medium

SABOURAND GLUCOSE MEDIUM (DSMZ Medium 1429)

[Ref.: #4506]

Culture medium growth

[Ref.: #4506]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4506]

Culture medium composition

expand / minimize

[Ref.: #4506]

Culture medium

RAE MEDIUM (DSMZ Medium 848)

[Ref.: #4506]

Culture medium growth

[Ref.: #4506]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4506]

Culture medium composition

expand / minimize

[Ref.: #39823]

Culture medium

MEDIUM 289 - for Acetobacter intermedius

[Ref.: #39823]

Culture medium growth

[Ref.: #39823]

Culture medium composition

expand / minimize

[Ref.: #121376]

Culture medium

CIP Medium 289

[Ref.: #121376]

Culture medium growth

[Ref.: #121376]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4506]		growth	30 °C
[Ref.: #39823]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121376]		growth	22-30 °C
[Ref.: #121376]	no	growth	10 °C
[Ref.: #121376]	no	growth	37 °C
[Ref.: #121376]	no	growth	41 °C
[Ref.: #121376]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121376]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.077

	Salt	Tested relation		Salt conc.
[Ref.: #121376]	NaCl	no	growth	0	%
[Ref.: #121376]	NaCl	no	growth	2	%
[Ref.: #121376]	NaCl	no	growth	4	%
[Ref.: #121376]	NaCl	no	growth	6	%
[Ref.: #121376]	NaCl	no	growth	8	%
[Ref.: #121376]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121376]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121376]	nitrate ChEBI	-	reduction
[Ref.: #121376]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121376]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121376]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121376]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #121376]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #121376]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121376]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #121376]	10227	not determinedn.d.	-	-	-	-	-	-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	+/-	-	-	-	+/-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121376]	8977	-	-	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4506]	Sample type/isolated from	industrial red wine vinegar fermentation
[Ref.: #4506]	Geographic location (country and/or sea, region)	Southern Part of Germany
[Ref.: #4506]	Country	Germany
[Ref.: #4506]	Country ISO 3 Code	DEU
[Ref.: #4506]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Submerged cider vinegar fermentation at a factory
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe

[Ref.: #121376]	Sample type/isolated from	Food, Red wine vinegar
[Ref.: #121376]	Geographic location (country and/or sea, region)	Southern
[Ref.: #121376]	Country	Germany
[Ref.: #121376]	Country ISO 3 Code	DEU
[Ref.: #121376]	Continent	Europe
[Ref.: #121376]	Isolation date	1998
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Engineered	#Industrial	-
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF794005 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	523
Soil Samples	662
Animal Samples	2327
Plant Samples	555
Total Samples	4067

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4506]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121376]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4506]	Acetobacter oboediens 16S ribosomal RNA gene	AJ001631	1482	GenBank ENA	65958 tax ID
[Ref.: #4506]	Gluconacetobacter oboediens gene for 16S rRNA, partial sequence, strain: DSM 11826	AB205221	1449	GenBank ENA	65958 tax ID
[Ref.: #20218]	Gluconacetobacter oboediens strain LMG 18849T 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	KC478455	740	GenBank ENA	65958 tax ID	*
[Ref.: #20218]	Gluconacetobacter oboediens strain DSM 11826T 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	KC478456	746	GenBank ENA	65958 tax ID	*
[Ref.: #20218]	Gluconacetobacter oboediens strain LMG 18849 16S ribosomal RNA gene, partial sequence	JF794004	1352	GenBank ENA	65958 tax ID	*
[Ref.: #20218]	Gluconacetobacter oboediens strain DSM 11826 16S ribosomal RNA gene, partial sequence	JF794005	1352	GenBank ENA	65958 tax ID	*
[Ref.: #20218]	Gluconacetobacter oboediens gene for 16S rRNA, partial sequence, strain: JCM 16937	AB645733	1411	GenBank ENA	65958 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Komagataeibacter oboediens LMG 18849	GCA_003207815	contig	GenBank ENA	65958 tax ID
[Ref.: #66792]	Komagataeibacter oboediens strain LMG 18849	65958.4	wgs	PATRIC	65958 tax ID	*
[Ref.: #66792]	Komagataeibacter oboediens LMG 18849	2846433441	draft	JGI IMG/M	65958 tax ID	*

[Ref.: #4506]

GC-content

59.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Komagataeibacter oboediens strain LMG 18849 PATRIC: 65958.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.033	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.077	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.053	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.751	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	58.484	no

Availability in culture collections External links

[Ref.: #4506]

Culture collection no.

DSM 11826, JCM 16937, LMG 18849, NCIMB 13557, LTH 2460, BCC 36445, BCRC 17057, CIP 105763

[Ref.: #69774]

SI-ID 12782

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Acetobacter oboediens sp. nov. and Acetobacter pomorum sp. nov., two new species isolated from industrial vinegar fermentations.	Sokollek SJ, Hertel C, Hammes WP	Int J Syst Bacteriol	10.1099/00207713-48-3-935	1998	*

References

#4506

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11826

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39823 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69774

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID12782.1 )

#121376 Collection of Institut Pasteur ; Curators of the CIP; CIP 105763
* These data were automatically processed and therefore are not curated

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Komagataeibacter oboediens strain LMG 18849

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